Does anybody work with Reduced Representation Sequencing/GBS data for metagenomic analysis? I have problems creating taxonomic data.

joey711 / phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

http://joey711.github.io/phyloseq/

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Does anybody work with Reduced Representation Sequencing/GBS data for metagenomic analysis? I have problems creating taxonomic data. #1638

Open Pablo-UY opened 1 year ago

Pablo-UY commented 1 year ago

Hi. I am new at analyzing metagenomic data. I have created my otu_table, but I have a list with Tags (56.000) and don´t know how to create a taxonomy table. I have my Tag sequences, tried blastn, but it is really slow.

Hope anybody can help. Thanks. Pablo.