search

joey711 / phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
http://joey711.github.io/phyloseq/
569 stars 187 forks source link

I can't get the coefficients of the taxa that contribute to the groups differences! #1652

Open Srvcl opened 1 year ago

Srvcl commented 1 year ago

Hi! I'm trying to get the coefficients of the taxa that generate the most differences between the groups in my permutest of types of supplies for the animals. I paste the results of the permutest:

permutest(betadispersionAlimentación, pairwise = TRUE)

image

When I try to get the coefficients, Studio answer me with this:

coefficients(betadispersionAlimentación)["C",] NULL

The object to get the coefficients is the type of: Permanova? Betadisper? Permutest?

i don't know hw can I get the taxa (genus, Family, Specie...) that contribute to the differences.

can anybody help me, please?

Thanks a lot!