phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
I have a phyloseq object and I want to filter out reads that are <1% across all samples and also filter out OTUs that are present <10% of samples. I need to do this in Rstudio with the "phyloseq" package.
I have a phyloseq object and I want to filter out reads that are <1% across all samples and also filter out OTUs that are present <10% of samples. I need to do this in Rstudio with the "phyloseq" package.