phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
Hi
I am trying to import qiime2 table to phyloseq and lot error Error in asMethod(object) :
Cholmod error 'problem too large' at file ../Core/cholmod_dense.c, line 102 --- this in HPC with high configuration.
I also tried with my mac 24 gb ram same result error
Error: cannot allocate vector of size 107.5 Gb
In addition: Warning message:
In asMethod(object) :
sparse->dense coercion: allocating vector of size 107.5 GiB.
Hi I am trying to import qiime2 table to phyloseq and lot error Error in asMethod(object) : Cholmod error 'problem too large' at file ../Core/cholmod_dense.c, line 102 --- this in HPC with high configuration.
I also tried with my mac 24 gb ram same result error Error: cannot allocate vector of size 107.5 Gb In addition: Warning message: In asMethod(object) : sparse->dense coercion: allocating vector of size 107.5 GiB.
Kindly suggest some ideas
Thank you for your time and suggestions