phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
I have a phyloseq object that I subsetted into two, pse and psl, for separate analyses. Now I would like to merge them back together but am running into errors regarding the tree, as you mentioned in the above thread:
pse
phyloseq-class experiment-level object
otu_table() OTU Table: [ 156 taxa and 40 samples ]
sample_data() Sample Data: [ 40 samples by 7 sample variables ]
tax_table() Taxonomy Table: [ 156 taxa by 7 taxonomic ranks ]
phy_tree() Phylogenetic Tree: [ 156 tips and 155 internal nodes ]
refseq() DNAStringSet: [ 156 reference sequences ]
Hi @joey711!
I have a similar issue as described in issue 825 https://github.com/joey711/phyloseq/issues/825
I have a phyloseq object that I subsetted into two, pse and psl, for separate analyses. Now I would like to merge them back together but am running into errors regarding the tree, as you mentioned in the above thread:
Any support to get around this?
Thanks!
Angelica