phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
Love phyloseq and all the work you do. I am working on making a heat plot and was wondering if there was a way to remove the sample names in the x axis and replace it with a factor.
Here is the plot I generated from a phyloseq object:
Obviously this figure is no good because I have too many samples and thus you cannot read what the X-axis means. Rather than subsetting my samples, I would really like the X-axis to display a block as factors. Here is what I am trying to do, where drift 1, 2 and 3 are factors in my metafile.
Is something like this possible to do in phyloseq without having to frankenstein multiple different heat maps?
Hello,
Love phyloseq and all the work you do. I am working on making a heat plot and was wondering if there was a way to remove the sample names in the x axis and replace it with a factor.
Here is the plot I generated from a phyloseq object:
Obviously this figure is no good because I have too many samples and thus you cannot read what the X-axis means. Rather than subsetting my samples, I would really like the X-axis to display a block as factors. Here is what I am trying to do, where drift 1, 2 and 3 are factors in my metafile.
Is something like this possible to do in phyloseq without having to frankenstein multiple different heat maps?