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joey711 / phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
http://joey711.github.io/phyloseq/
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Convert vignettes to .Rmd/HTML #191

Closed joey711 closed 10 years ago

joey711 commented 11 years ago

Now that Rv3.0.0 supports .Rmd as a "non standard" vignette, can think about converting sweave files to .Rmd files, which are easier to write and maintain.

Check with Bioconductor team about whether this is supported by their build checks. Obviously this is a non-starter if their check system is going to fail the package for either (1) not having any sweave-based vignette any longer or (2) having .Rmd vignettes in the package at all.

joey711 commented 10 years ago

This is becoming more fully supported, and I should put it in whenever I have them converted. One of the .Rnw vignettes has already been converted, and the other is partially done. This is currently in a side branch of the package that I should merge when its ready and passes tests.

joey711 commented 10 years ago

Done: 04e6fa90862321a253c1b8d18873a9007730ac30