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joey711 / phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
http://joey711.github.io/phyloseq/
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Manual Import successful but no Ordination or Heatmap #407

Closed ashishdamania closed 9 years ago

ashishdamania commented 9 years ago

Hi, I was able to import the data manually into Phyloseq but for some reason I keep getting this error: Error in cmdscale(dist, k = k) : 'k' must be in {1, 2, .. n - 1}

> physeq
phyloseq-class experiment-level object
otu_table()   OTU Table:         [ 193 taxa and 2 samples ]
tax_table()   Taxonomy Table:    [ 193 taxa by 16 taxonomic ranks ]
> plot_heatmap(physeq)
Error in cmdscale(dist, k = k) : 'k' must be in {1, 2, ..  n - 1}

Plot_bar works fine but it just fails at any other functions. 

> otu_table(physeq)
OTU Table:          [193 taxa and 2 samples]
                     taxa are rows
       step_4_lane_2 step_4_lane_10
OTU1             469            251
OTU2              11              0
OTU3             220            204
OTU4             434            330
OTU5              37             26
OTU6              63             47
OTU7              72             58
OTU8              50             25
OTU9             779            504
OTU10             11              0
OTU11            144            110
OTU12             70             40
OTU13            353            184
OTU14             65             27
OTU15            325            101
OTU16             30              0
OTU17            144             51
OTU18             15              0
OTU19             14              0
OTU20             66             24
OTU21            163             58
OTU22             12              0
OTU23             60             15
OTU24             14              0
OTU25             11              0
OTU26            244             82
OTU27           1524            687
OTU28            274            119
OTU29             15              0
OTU30           1645            677
OTU31             21              0
OTU32             77             18
OTU33            562            260
OTU34            102             63
OTU35             20              0
OTU36           6497           3271
OTU37             18              0
OTU38             15              0
OTU39             36              0
OTU40            357            181
OTU41             59             23
OTU42             11              0
OTU43             21             11
OTU44             27              0
OTU45         107817          53719
OTU46             23             12
OTU47             14              0
OTU48            105             42
OTU49             46             23
OTU50             37             18
OTU51             22              0
OTU52             13              0
OTU53            138             47
OTU54             17             12
OTU55             12              0
OTU56             72             35
OTU57             69             32
OTU58            104             40
OTU59           3820           2161
OTU60             14              0
OTU61             45             33
OTU62             84             50
OTU63            166             96
OTU64             12              0
OTU65             95             36
OTU66            234             69
OTU67             63             22
OTU68            430            130
OTU69           1699            733
OTU70             23              0
OTU71             21              0
OTU72             31             11
OTU73             28             13
OTU74           1209            371
OTU75             13              0
OTU76             18              0
OTU77             11              0
OTU78           1294            485
OTU79            157             30
OTU80             58             12
OTU81             71             16
OTU82             12              0
OTU83             75             21
OTU84             13              0
OTU85            448            198
OTU86             18             11
OTU87             11              0
OTU88            108             47
OTU89             33              0
OTU90             74             28
OTU91            496            128
OTU92            503            231
OTU93          48870          18919
OTU94           2416            887
OTU95            764            283
OTU96           1566            509
OTU97             11              0
OTU98             90             28
OTU99            325            110
OTU100            79             41
OTU101            21              0
OTU102            15              0
OTU103            30             11
OTU104            14              0
OTU105            42              0
OTU106            80             39
OTU107            86             20
OTU108            37             15
OTU109          2521            936
OTU110            11              0
OTU111            17              0
OTU112            82             27
OTU113           111             52
OTU114          2184            814
OTU115           118             38
OTU116           586            256
OTU117            25              0
OTU118            27              0
OTU119            28             16
OTU120          1449            564
OTU121          1325            554
OTU122          1363            530
OTU123            11              0
OTU124           101             37
OTU125            17              0
OTU126           701            337
OTU127            35             17
OTU128            32             19
OTU129            15             13
OTU130            14              0
OTU131          100            473
OTU132            52             32
OTU133            35             18
OTU134            15              0
OTU135            21              0
OTU136            11              0
OTU137            64             41
OTU138            80             41
OTU139          1140            646
OTU140            35             21
OTU141           285            193
OTU142           217            149
OTU143            72             41
OTU144           167             95
OTU145            26             24
OTU146            17             13
OTU147           126             75
OTU148           121             45
OTU149            55             26
OTU150            26              0
OTU151            42             31
OTU152            29              0
OTU153             0             13
OTU154            63             32
OTU155            12              0
OTU156           128             51
OTU157            74             25
OTU158          1270            419
OTU159            12              0
OTU160            11              0
OTU161            11              0
OTU162          1176            343
OTU163            73             21
OTU164            36             16
OTU165            11              0
OTU166             0             11
OTU167           155             73
OTU168            46             27
OTU169            98             29
OTU170            17             16
OTU171            85             36
OTU172            69             59
OTU173            95             26
OTU174           273            116
OTU175          1890           1095
OTU176            61             31
OTU177            13              0
OTU178           244            156
OTU179            25              0
OTU180           472            306
OTU181            13              0
OTU182            30              0
OTU183          1007            479
OTU184            12              0
OTU185            57             19
OTU186            57             26
OTU187            13              0
OTU188            15             16
OTU189            13              0
OTU190            11              0
OTU191            13              0
OTU192           173            102
OTU193         50211         385299
>tax_table(physeq)
"Sample1"   "Sample2"   "Sample3"   "Sample4"   "Sample5"   "Sample6"   "Sample7"   "Sample8"   "Sample9"   "Sample10"  "Sample11"  "Sample12"  "Sample13"  "Sample14"  "Sample15"  "Sample16"
"OTU1"  "Bacteria"  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU2"  "Bacteria"  "Actinobacteria"    "Actinobacteria"    "Actinobacteridae"  "Actinomycetales"   "Micrococcineae"    "Micrococcaceae"    "Rothia"    "Rothia mucilaginosa"   ""  ""  ""  ""  ""  ""  ""
"OTU3"  "Bacteria"  "Actinobacteria"    "Actinobacteria"    "Actinobacteridae"  "Bifidobacteriales" "Bifidobacteriaceae"    "Bifidobacterium"   ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU4"  "Bacteria"  "Actinobacteria"    "Actinobacteria"    "Actinobacteridae"  "Bifidobacteriales" "Bifidobacteriaceae"    "Bifidobacterium"   "Bifidobacterium adolescentis"  ""  ""  ""  ""  ""  ""  ""  ""
"OTU5"  "Bacteria"  "Actinobacteria"    "Actinobacteria"    "Actinobacteridae"  "Bifidobacteriales" "Bifidobacteriaceae"    "Bifidobacterium"   "Bifidobacterium adolescentis"  "Bifidobacterium adolescentis ATCC 15703"   ""  ""  ""  ""  ""  ""  ""
"OTU6"  "Bacteria"  "Actinobacteria"    "Actinobacteria"    "Actinobacteridae"  "Bifidobacteriales" "Bifidobacteriaceae"    "Bifidobacterium"   "Bifidobacterium adolescentis"  "Bifidobacterium adolescentis L2-32"    ""  ""  ""  ""  ""  ""  ""
"OTU7"  "Bacteria"  "Actinobacteria"    "Actinobacteria"    "Coriobacteridae"   "Coriobacteriales"  "Coriobacterineae"  "Coriobacteriaceae" ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU8"  "Bacteria"  "Actinobacteria"    "Actinobacteria"    "Coriobacteridae"   "Coriobacteriales"  "Coriobacterineae"  "Coriobacteriaceae" "Collinsella"   ""  ""  ""  ""  ""  ""  ""  ""
"OTU9"  "Bacteria"  "Actinobacteria"    "Actinobacteria"    "Coriobacteridae"   "Coriobacteriales"  "Coriobacterineae"  "Coriobacteriaceae" "Collinsella"   "Collinsella aerofaciens"   "Collinsella aerofaciens ATCC 25986"    ""  ""  ""  ""  ""  ""
"OTU10" "Bacteria"  "Actinobacteria"    "Actinobacteria"    "Coriobacteridae"   "Coriobacteriales"  "Coriobacterineae"  "Coriobacteriaceae" "Gordonibacter" "Gordonibacter pamelaeae"   "Gordonibacter pamelaeae 7-10-1-b"  ""  ""  ""  ""  ""  ""
"OTU11" "Bacteria"  "Actinobacteria"    "Actinobacteria"    "Coriobacteridae"   "Coriobacteriales"  "Coriobacterineae"  "Coriobacteriaceae" "Senegalemassilia"  "Senegalemassilia anaerobia"    "Senegalemassilia anaerobia JC110"  ""  ""  ""  ""  ""  ""
"OTU12" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU13" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU14" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Bacteroidaceae"    ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU15" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Bacteroidaceae"    "Bacteroides"   ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU16" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Bacteroidaceae"    "Bacteroides"   "Bacteroides faecis"    "Bacteroides faecis MAJ27"  ""  ""  ""  ""  ""  ""  ""
"OTU17" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Bacteroidaceae"    "Bacteroides"   "Bacteroides massiliensis"  "Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223"    ""  ""  ""  ""  ""  ""  ""
"OTU18" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Bacteroidaceae"    "Bacteroides"   "Bacteroides ovatus"    ""  ""  ""  ""  ""  ""  ""  ""
"OTU19" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Bacteroidaceae"    "Bacteroides"   "Bacteroides ovatus"    "Bacteroides ovatus ATCC 8483"  ""  ""  ""  ""  ""  ""  ""
"OTU20" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Bacteroidaceae"    "Bacteroides"   "Bacteroides uniformis" "Bacteroides uniformis ATCC 8492"   ""  ""  ""  ""  ""  ""  ""
"OTU21" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Bacteroidaceae"    "Bacteroides"   "Bacteroides vulgatus"  ""  ""  ""  ""  ""  ""  ""  ""
"OTU22" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Bacteroidaceae"    "Bacteroides"   "Bacteroides vulgatus"  "Bacteroides vulgatus ATCC 8482"    ""  ""  ""  ""  ""  ""  ""
"OTU23" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Bacteroidaceae"    "Bacteroides"   "Bacteroides vulgatus"  "Bacteroides vulgatus dnLKV7"   ""  ""  ""  ""  ""  ""  ""
"OTU24" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Porphyromonadaceae"    ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU25" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Porphyromonadaceae"    "Butyricimonas" ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU26" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Porphyromonadaceae"    "Butyricimonas" "Butyricimonas virosa"  "Butyricimonas virosa DSM 23226"    ""  ""  ""  ""  ""  ""  ""
"OTU27" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Porphyromonadaceae"    "Odoribacter"   "Odoribacter splanchnicus"  "Odoribacter splanchnicus DSM 220712"   ""  ""  ""  ""  ""  ""  ""
"OTU28" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Porphyromonadaceae"    "Parabacteroides"   ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU29" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Porphyromonadaceae"    "Parabacteroides"   "Parabacteroides distasonis"    "Parabacteroides distasonis CL03T12C09" ""  ""  ""  ""  ""  ""  ""
"OTU30" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Porphyromonadaceae"    "Parabacteroides"   "Parabacteroides merdae"    ""  ""  ""  ""  ""  ""  ""  ""
"OTU31" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Porphyromonadaceae"    "Parabacteroides"   "Parabacteroides merdae"    "Parabacteroides merdae ATCC 43184" ""  ""  ""  ""  ""  ""  ""
"OTU32" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Porphyromonadaceae"    "Parabacteroides"   "Parabacteroides merdae"    "Parabacteroides merdae CL03T12C32" ""  ""  ""  ""  ""  ""  ""
"OTU33" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Porphyromonadaceae"    "Parabacteroides"   "Parabacteroides sp. D13"   ""  ""  ""  ""  ""  ""  ""  ""
"OTU34" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU35" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Hallella"  "Hallella seregens" "Hallella seregens ATCC 51272"  ""  ""  ""  ""  ""  ""  ""
"OTU36" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Prevotella"    ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU37" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Prevotella"    "Prevotella albensis"   "Prevotella albensis DSM 11370" ""  ""  ""  ""  ""  ""  ""
"OTU38" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Prevotella"    "Prevotella amnii"  ""  ""  ""  ""  ""  ""  ""  ""
"OTU39" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Prevotella"    "Prevotella bergensis"  "Prevotella bergensis DSM 17361"    ""  ""  ""  ""  ""  ""  ""
"OTU40" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Prevotella"    "Prevotella bivia"  ""  ""  ""  ""  ""  ""  ""  ""
"OTU41" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Prevotella"    "Prevotella bryantii"   "Prevotella bryantii B14"   ""  ""  ""  ""  ""  ""  ""
"OTU42" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Prevotella"    "Prevotella bryantii"   "Prevotella bryantii C21a"  ""  ""  ""  ""  ""  ""  ""
"OTU43" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Prevotella"    "Prevotella buccalis"   "Prevotella buccalis ATCC 35310"    ""  ""  ""  ""  ""  ""  ""
"OTU44" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Prevotella"    "Prevotella copri"  ""  ""  ""  ""  ""  ""  ""  ""
"OTU45" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Prevotella"    "Prevotella copri"  "Prevotella copri DSM 18205"    ""  ""  ""  ""  ""  ""  ""
"OTU46" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Prevotella"    "Prevotella dentalis"   "Prevotella dentalis DSM 3688"  ""  ""  ""  ""  ""  ""  ""
"OTU47" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Prevotella"    "Prevotella denticola"  ""  ""  ""  ""  ""  ""  ""  ""
"OTU48" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Prevotella"    "Prevotella denticola"  "Prevotella denticola CRIS 18C-A"   ""  ""  ""  ""  ""  ""  ""
"OTU49" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Prevotella"    "Prevotella disiens"    ""  ""  ""  ""  ""  ""  ""  ""
"OTU50" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Prevotella"    "Prevotella disiens"    "Prevotella disiens FB035-09AN" ""  ""  ""  ""  ""  ""  ""
"OTU51" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Prevotella"    "Prevotella disiens"    "Prevotella disiens JCM 6334 = ATCC 29426"  ""  ""  ""  ""  ""  ""  ""
"OTU52" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Prevotella"    "Prevotella maculosa"   ""  ""  ""  ""  ""  ""  ""  ""
"OTU53" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Prevotella"    "Prevotella multisaccharivorax" "Prevotella multisaccharivorax DSM 17128"   ""  ""  ""  ""  ""  ""  ""
"OTU54" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Prevotella"    "Prevotella oris"   ""  ""  ""  ""  ""  ""  ""  ""
"OTU55" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Prevotella"    "Prevotella pleuritidis"    "Prevotella pleuritidis F0068"  ""  ""  ""  ""  ""  ""  ""
"OTU56" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Prevotella"    "Prevotella sp. AGR2160"    ""  ""  ""  ""  ""  ""  ""  ""
"OTU57" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Prevotella"    "Prevotella sp. BV3P1"  ""  ""  ""  ""  ""  ""  ""  ""
"OTU58" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Prevotella"    "Prevotella sp. F0091"  ""  ""  ""  ""  ""  ""  ""  ""
"OTU59" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Prevotella"    "Prevotella stercorea"  "Prevotella stercorea DSM 18206"    ""  ""  ""  ""  ""  ""  ""
"OTU60" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Prevotellaceae"    "Prevotella"    "Prevotella timonensis" "Prevotella timonensis 4401737 = DSM 22865 = JCM 15640" ""  ""  ""  ""  ""  ""  ""
"OTU61" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Rikenellaceae" "Alistipes" ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU62" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Rikenellaceae" "Alistipes" "Alistipes senegalensis"    "Alistipes senegalensis JC50"   ""  ""  ""  ""  ""  ""  ""
"OTU63" "Bacteria"  "Bacteroidetes/Chlorobi group"  "Bacteroidetes" "Bacteroidia"   "Bacteroidales" "Rikenellaceae" "Alistipes" "Candidatus Alistipes marseilloanorexicus"  "Candidatus Alistipes marseilloanorexicus AP11" ""  ""  ""  ""  ""  ""  ""
"OTU64" "Bacteria"  "Chlamydiae/Verrucomicrobia group"  "Verrucomicrobia"   "Verrucomicrobiae"  "Verrucomicrobiales"    "Verrucomicrobiaceae"   "Akkermansia"   "Akkermansia muciniphila"   "Akkermansia muciniphila ATCC BAA-835"  ""  ""  ""  ""  ""  ""  ""
"OTU65" "Bacteria"  "Firmicutes"    ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU66" "Bacteria"  "Firmicutes"    "Bacilli"   "Lactobacillales"   "Enterococcaceae"   "Enterococcus"  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU67" "Bacteria"  "Firmicutes"    "Bacilli"   "Lactobacillales"   "Enterococcaceae"   "Enterococcus"  "Enterococcus faecium"  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU68" "Bacteria"  "Firmicutes"    "Bacilli"   "Lactobacillales"   "Lactobacillaceae"  "Lactobacillus" ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU69" "Bacteria"  "Firmicutes"    "Bacilli"   "Lactobacillales"   "Lactobacillaceae"  "Lactobacillus" "Lactobacillus plantarum"   ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU70" "Bacteria"  "Firmicutes"    "Bacilli"   "Lactobacillales"   "Lactobacillaceae"  "Lactobacillus" "Lactobacillus plantarum"   "Lactobacillus plantarum UCMA 3037" ""  ""  ""  ""  ""  ""  ""  ""
"OTU71" "Bacteria"  "Firmicutes"    "Bacilli"   "Lactobacillales"   "Lactobacillaceae"  "Lactobacillus" "Lactobacillus rhamnosus"   ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU72" "Bacteria"  "Firmicutes"    "Bacilli"   "Lactobacillales"   "Streptococcaceae"  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU73" "Bacteria"  "Firmicutes"    "Bacilli"   "Lactobacillales"   "Streptococcaceae"  "Lactococcus"   ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU74" "Bacteria"  "Firmicutes"    "Bacilli"   "Lactobacillales"   "Streptococcaceae"  "Lactococcus"   "Lactococcus garvieae"  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU75" "Bacteria"  "Firmicutes"    "Bacilli"   "Lactobacillales"   "Streptococcaceae"  "Lactococcus"   "Lactococcus garvieae"  "Lactococcus garvieae 21881"    ""  ""  ""  ""  ""  ""  ""  ""
"OTU76" "Bacteria"  "Firmicutes"    "Bacilli"   "Lactobacillales"   "Streptococcaceae"  "Lactococcus"   "Lactococcus lactis"    ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU77" "Bacteria"  "Firmicutes"    "Bacilli"   "Lactobacillales"   "Streptococcaceae"  "Lactococcus"   "Lactococcus lactis"    "Lactococcus lactis subsp. lactis"  ""  ""  ""  ""  ""  ""  ""  ""
"OTU78" "Bacteria"  "Firmicutes"    "Bacilli"   "Lactobacillales"   "Streptococcaceae"  "Streptococcus" ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU79" "Bacteria"  "Firmicutes"    "Bacilli"   "Lactobacillales"   "Streptococcaceae"  "Streptococcus" "Streptococcus infantarius" "Streptococcus infantarius subsp. infantarius"  ""  ""  ""  ""  ""  ""  ""  ""
"OTU80" "Bacteria"  "Firmicutes"    "Bacilli"   "Lactobacillales"   "Streptococcaceae"  "Streptococcus" "Streptococcus mutans"  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU81" "Bacteria"  "Firmicutes"    "Bacilli"   "Lactobacillales"   "Streptococcaceae"  "Streptococcus" "Streptococcus salivarius"  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU82" "Bacteria"  "Firmicutes"    "Bacilli"   "Lactobacillales"   "Streptococcaceae"  "Streptococcus" "Streptococcus salivarius"  "Streptococcus salivarius K12"  ""  ""  ""  ""  ""  ""  ""  ""
"OTU83" "Bacteria"  "Firmicutes"    "Bacilli"   "Lactobacillales"   "Streptococcaceae"  "Streptococcus" "Streptococcus thermophilus"    ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU84" "Bacteria"  "Firmicutes"    "Clostridia"    ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU85" "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU86" "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Clostridiaceae"    "Butyricicoccus"    "Butyricicoccus pullicaecorum"  "Butyricicoccus pullicaecorum 1.2"  ""  ""  ""  ""  ""  ""  ""  ""
"OTU87" "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Clostridiaceae"    "Clostridium"   "Clostridium clostridioforme"   "Clostridium clostridioforme CM201" ""  ""  ""  ""  ""  ""  ""  ""
"OTU88" "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Eubacteriaceae"    "Eubacterium"   ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU89" "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Eubacteriaceae"    "Eubacterium"   "Eubacterium eligens"   "Eubacterium eligens ATCC 27750"    ""  ""  ""  ""  ""  ""  ""  ""
"OTU90" "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Eubacteriaceae"    "Eubacterium"   "Eubacterium eligens"   "Eubacterium eligens ATCC 27750 plasmid unnamed"    ""  ""  ""  ""  ""  ""  ""  ""
"OTU91" "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Eubacteriaceae"    "Eubacterium"   "Eubacterium hallii"    "Eubacterium hallii DSM 3353"   ""  ""  ""  ""  ""  ""  ""  ""
"OTU92" "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Eubacteriaceae"    "Eubacterium"   "Eubacterium ramulus"   "Eubacterium ramulus ATCC 29099"    ""  ""  ""  ""  ""  ""  ""  ""
"OTU93" "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Eubacteriaceae"    "Eubacterium"   "Eubacterium rectale"   ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU94" "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Eubacteriaceae"    "Eubacterium"   "Eubacterium rectale"   "Eubacterium rectale ATCC 33656"    ""  ""  ""  ""  ""  ""  ""  ""
"OTU95" "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Eubacteriaceae"    "Eubacterium"   "Eubacterium rectale"   "Eubacterium rectale DSM 17629" ""  ""  ""  ""  ""  ""  ""  ""
"OTU96" "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Eubacteriaceae"    "Eubacterium"   "Eubacterium rectale"   "Eubacterium rectale M104/1"    ""  ""  ""  ""  ""  ""  ""  ""
"OTU97" "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Eubacteriaceae"    "Eubacterium"   "Eubacterium saphenum"  "Eubacterium saphenum ATCC 49989"   ""  ""  ""  ""  ""  ""  ""  ""
"OTU98" "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Eubacteriaceae"    "Eubacterium"   "Eubacterium ventriosum"    "Eubacterium ventriosum ATCC 27560" ""  ""  ""  ""  ""  ""  ""  ""
"OTU99" "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU100"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Blautia"   ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU101"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Blautia"   "Blautia wexlerae"  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU102"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Blautia"   "Blautia wexlerae"  "Blautia wexlerae AGR2146"  ""  ""  ""  ""  ""  ""  ""  ""
"OTU103"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Blautia"   "Blautia wexlerae"  "Blautia wexlerae DSM 19850"    ""  ""  ""  ""  ""  ""  ""  ""
"OTU104"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Blautia"   "[Ruminococcus] gnavus" "Ruminococcus gnavus AGR2154"   ""  ""  ""  ""  ""  ""  ""  ""
"OTU105"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Blautia"   "[Ruminococcus] obeum"  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU106"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Blautia"   "[Ruminococcus] obeum"  "Ruminococcus obeum A2-162" ""  ""  ""  ""  ""  ""  ""  ""
"OTU107"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Blautia"   "[Ruminococcus] obeum"  "Ruminococcus obeum ATCC 29174" ""  ""  ""  ""  ""  ""  ""  ""
"OTU108"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Blautia"   "[Ruminococcus] torques"    ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU109"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Blautia"   "[Ruminococcus] torques"    "Ruminococcus torques L2-14"    ""  ""  ""  ""  ""  ""  ""  ""
"OTU110"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Butyrivibrio"  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU111"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Butyrivibrio"  "Butyrivibrio crossotus"    "Butyrivibrio crossotus DSM 2876"   ""  ""  ""  ""  ""  ""  ""  ""
"OTU112"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Coprococcus"   ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU113"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Coprococcus"   "Coprococcus catus" "Coprococcus catus GD/7"    ""  ""  ""  ""  ""  ""  ""  ""
"OTU114"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Coprococcus"   "Coprococcus comes" "Coprococcus comes ATCC 27758"  ""  ""  ""  ""  ""  ""  ""  ""
"OTU115"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Coprococcus"   "Coprococcus sp. ART55/1"   ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU116"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Dorea" ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU117"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Dorea" "Dorea formicigenerans" ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU118"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Dorea" "Dorea formicigenerans" "Dorea formicigenerans 4_6_53AFAA"  ""  ""  ""  ""  ""  ""  ""  ""
"OTU119"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Dorea" "Dorea formicigenerans" "Dorea formicigenerans ATCC 27755"  ""  ""  ""  ""  ""  ""  ""  ""
"OTU120"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Dorea" "Dorea longicatena" ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU121"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Dorea" "Dorea longicatena" "Dorea longicatena AGR2136" ""  ""  ""  ""  ""  ""  ""  ""
"OTU122"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Dorea" "Dorea longicatena" "Dorea longicatena DSM 13814"   ""  ""  ""  ""  ""  ""  ""  ""
"OTU123"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Dorea" "Dorea sp. AGR2135" ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU124"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Roseburia" ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU125"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Roseburia" "Roseburia hominis" "Roseburia hominis A2-183"  ""  ""  ""  ""  ""  ""  ""  ""
"OTU126"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Roseburia" "Roseburia intestinalis"    ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU127"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Roseburia" "Roseburia intestinalis"    "Roseburia intestinalis L1-82"  ""  ""  ""  ""  ""  ""  ""  ""
"OTU128"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Roseburia" "Roseburia intestinalis"    "Roseburia intestinalis M50/1"  ""  ""  ""  ""  ""  ""  ""  ""
"OTU129"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Roseburia" "Roseburia intestinalis"    "Roseburia intestinalis XB6B4"  ""  ""  ""  ""  ""  ""  ""  ""
"OTU130"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Roseburia" "Roseburia inulinivorans"   ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU131"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Lachnospiraceae"   "Roseburia" "Roseburia inulinivorans"   "Roseburia inulinivorans DSM 16841" ""  ""  ""  ""  ""  ""  ""  ""
"OTU132"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Oscillospiraceae"  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU133"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Oscillospiraceae"  "Oscillibacter" ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU134"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Oscillospiraceae"  "Oscillibacter" "Oscillibacter sp. 1-3" ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU135"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Peptostreptococcaceae" "[Clostridium] bartlettii"  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU136"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Peptostreptococcaceae" "[Clostridium] bartlettii"  "Clostridium bartlettii DSM 16795"  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU137"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Ruminococcaceae"   ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU138"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Ruminococcaceae"   "Faecalibacterium"  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU139"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Ruminococcaceae"   "Faecalibacterium"  "Faecalibacterium prausnitzii"  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU140"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Ruminococcaceae"   "Faecalibacterium"  "Faecalibacterium prausnitzii"  "Faecalibacterium cf. prausnitzii KLE1255"  ""  ""  ""  ""  ""  ""  ""  ""
"OTU141"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Ruminococcaceae"   "Faecalibacterium"  "Faecalibacterium prausnitzii"  "Faecalibacterium prausnitzii A2-165"   ""  ""  ""  ""  ""  ""  ""  ""
"OTU142"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Ruminococcaceae"   "Faecalibacterium"  "Faecalibacterium prausnitzii"  "Faecalibacterium prausnitzii L2-6" ""  ""  ""  ""  ""  ""  ""  ""
"OTU143"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Ruminococcaceae"   "Faecalibacterium"  "Faecalibacterium prausnitzii"  "Faecalibacterium prausnitzii M21/2"    ""  ""  ""  ""  ""  ""  ""  ""
"OTU144"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Ruminococcaceae"   "Faecalibacterium"  "Faecalibacterium prausnitzii"  "Faecalibacterium prausnitzii SL3/3"    ""  ""  ""  ""  ""  ""  ""  ""
"OTU145"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Ruminococcaceae"   "Ruminococcus"  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU146"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Ruminococcaceae"   "Ruminococcus"  "Ruminococcus bromii"   "Ruminococcus bromii L2-63" ""  ""  ""  ""  ""  ""  ""  ""
"OTU147"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Ruminococcaceae"   "Ruminococcus"  "Ruminococcus callidus" "Ruminococcus callidus ATCC 27760"  ""  ""  ""  ""  ""  ""  ""  ""
"OTU148"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Ruminococcaceae"   "Ruminococcus"  "Ruminococcus lactaris" ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU149"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Ruminococcaceae"   "Ruminococcus"  "Ruminococcus sp. 5_1_39BFAA"   ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU150"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Ruminococcaceae"   "Ruminococcus"  "Ruminococcus sp. 80/3" ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU151"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Ruminococcaceae"   "Ruminococcus"  "Ruminococcus sp. JC304"    ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU152"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Ruminococcaceae"   "Ruminococcus"  "Ruminococcus sp. SR1/5"    ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU153"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Ruminococcaceae"   "Subdoligranulum"   "Subdoligranulum sp. 4_3_54A2FAA"   ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU154"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "Ruminococcaceae"   "Subdoligranulum"   "Subdoligranulum variabile" "Subdoligranulum variabile DSM 15176"   ""  ""  ""  ""  ""  ""  ""  ""
"OTU155"    "Bacteria"  "Firmicutes"    "Clostridia"    "Clostridiales" "unclassified Clostridiales (miscellaneous)"    ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU156"    "Bacteria"  "Firmicutes"    "Erysipelotrichia"  "Erysipelotrichales"    "Erysipelotrichaceae"   ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU157"    "Bacteria"  "Firmicutes"    "Erysipelotrichia"  "Erysipelotrichales"    "Erysipelotrichaceae"   "Catenibacterium"   ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU158"    "Bacteria"  "Firmicutes"    "Erysipelotrichia"  "Erysipelotrichales"    "Erysipelotrichaceae"   "Catenibacterium"   "Catenibacterium mitsuokai" "Catenibacterium mitsuokai DSM 15897"   ""  ""  ""  ""  ""  ""  ""  ""
"OTU159"    "Bacteria"  "Firmicutes"    "Erysipelotrichia"  "Erysipelotrichales"    "Erysipelotrichaceae"   "Coprobacillus" ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU160"    "Bacteria"  "Firmicutes"    "Erysipelotrichia"  "Erysipelotrichales"    "Erysipelotrichaceae"   "Erysipelotrichaceae bacterium 6_1_45"  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU161"    "Bacteria"  "Firmicutes"    "Erysipelotrichia"  "Erysipelotrichales"    "Erysipelotrichaceae"   "Holdemania"    "Holdemania filiformis" "Holdemania filiformis DSM 12042"   ""  ""  ""  ""  ""  ""  ""  ""
"OTU162"    "Bacteria"  "Firmicutes"    "Erysipelotrichia"  "Erysipelotrichales"    "Erysipelotrichaceae"   "[Eubacterium] biforme" "Eubacterium biforme DSM 3989"  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU163"    "Bacteria"  "Firmicutes"    "Erysipelotrichia"  "Erysipelotrichales"    "Erysipelotrichaceae"   "[Eubacterium] cylindroides"    ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU164"    "Bacteria"  "Firmicutes"    "Erysipelotrichia"  "Erysipelotrichales"    "Erysipelotrichaceae"   "[Eubacterium] cylindroides"    "[Eubacterium] cylindroides ATCC 27803" ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU165"    "Bacteria"  "Firmicutes"    "Erysipelotrichia"  "Erysipelotrichales"    "Erysipelotrichaceae"   "[Eubacterium] cylindroides"    "[Eubacterium] cylindroides T2-87"  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU166"    "Bacteria"  "Firmicutes"    "Erysipelotrichia"  "Erysipelotrichales"    "Erysipelotrichaceae"   "[Eubacterium] dolichum"    "Eubacterium dolichum DSM 3991" ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU167"    "Bacteria"  "Firmicutes"    "Erysipelotrichia"  "Erysipelotrichales"    "Erysipelotrichaceae"   "unclassified Erysipelotrichaceae"  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU168"    "Bacteria"  "Firmicutes"    "Negativicutes" "Selenomonadales"   "Acidaminococcaceae"    "Acidaminococcus"   ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU169"    "Bacteria"  "Firmicutes"    "Negativicutes" "Selenomonadales"   "Acidaminococcaceae"    "Acidaminococcus"   "Acidaminococcus fermentans"    "Acidaminococcus fermentans DSM 20731"  ""  ""  ""  ""  ""  ""  ""  ""
"OTU170"    "Bacteria"  "Firmicutes"    "Negativicutes" "Selenomonadales"   "Acidaminococcaceae"    "Acidaminococcus"   "Acidaminococcus intestini" ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU171"    "Bacteria"  "Firmicutes"    "Negativicutes" "Selenomonadales"   "Acidaminococcaceae"    "Acidaminococcus"   "Acidaminococcus intestini" "Acidaminococcus intestini RyC-MR95"    ""  ""  ""  ""  ""  ""  ""  ""
"OTU172"    "Bacteria"  "Firmicutes"    "Negativicutes" "Selenomonadales"   "Veillonellaceae"   ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU173"    "Bacteria"  "Firmicutes"    "Negativicutes" "Selenomonadales"   "Veillonellaceae"   "Dialister" ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU174"    "Bacteria"  "Firmicutes"    "Negativicutes" "Selenomonadales"   "Veillonellaceae"   "Dialister" "Dialister succinatiphilus" "Dialister succinatiphilus YIT 11850"   ""  ""  ""  ""  ""  ""  ""  ""
"OTU175"    "Bacteria"  "Firmicutes"    "Negativicutes" "Selenomonadales"   "Veillonellaceae"   "Megasphaera"   ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU176"    "Bacteria"  "Firmicutes"    "Negativicutes" "Selenomonadales"   "Veillonellaceae"   "Megasphaera"   "Megasphaera elsdenii"  "Megasphaera elsdenii DSM 20460"    ""  ""  ""  ""  ""  ""  ""  ""
"OTU177"    "Bacteria"  "Firmicutes"    "Negativicutes" "Selenomonadales"   "Veillonellaceae"   "Mitsuokella"   ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU178"    "Bacteria"  "Firmicutes"    "Negativicutes" "Selenomonadales"   "Veillonellaceae"   "Mitsuokella"   "Mitsuokella multacida" "Mitsuokella multacida DSM 20544"   ""  ""  ""  ""  ""  ""  ""  ""
"OTU179"    "Bacteria"  "Proteobacteria"    "Betaproteobacteria"    "Burkholderiales"   ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU180"    "Bacteria"  "Proteobacteria"    "Betaproteobacteria"    "Burkholderiales"   "Sutterellaceae"    "Sutterella"    "Sutterella wadsworthensis" "Sutterella wadsworthensis 2_1_59BFAA"  ""  ""  ""  ""  ""  ""  ""  ""
"OTU181"    "Bacteria"  "Proteobacteria"    "Gammaproteobacteria"   ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU182"    "Bacteria"  "Proteobacteria"    "Gammaproteobacteria"   "Chromatiales"  "Ectothiorhodospiraceae"    "Thioalkalivibrio"  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU183"    "Bacteria"  "Proteobacteria"    "Gammaproteobacteria"   "Enterobacteriales" "Enterobacteriaceae"    ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU184"    "Bacteria"  "Proteobacteria"    "Gammaproteobacteria"   "Enterobacteriales" "Enterobacteriaceae"    "Citrobacter"   ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU185"    "Bacteria"  "Proteobacteria"    "Gammaproteobacteria"   "Enterobacteriales" "Enterobacteriaceae"    "Escherichia"   ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU186"    "Bacteria"  "Proteobacteria"    "Gammaproteobacteria"   "Enterobacteriales" "Enterobacteriaceae"    "Escherichia"   "Escherichia coli"  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU187"    "Bacteria"  "Proteobacteria"    "delta/epsilon subdivisions"    "Deltaproteobacteria"   "Desulfovibrionales"    "Desulfovibrionaceae"   "Bilophila" ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU188"    "Bacteria"  "Proteobacteria"    "delta/epsilon subdivisions"    "Deltaproteobacteria"   "Desulfovibrionales"    "Desulfovibrionaceae"   "Desulfovibrio" "Desulfovibrio piger"   "Desulfovibrio piger ATCC 29098"    ""  ""  ""  ""  ""  ""  ""
"OTU189"    "Bacteria"  "Spirochaetes"  "Spirochaetia"  "Spirochaetales"    "Brachyspiraceae"   "Brachyspira"   "Brachyspira pilosicoli"    ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU190"    "Eukaryota" "Metazoa"   "Chordata"  "Craniata"  "Gnathostomata" "Mammalia"  "Euarchontoglires"  "Primates"  "Haplorrhini"   "Simiiformes"   "Catarrhini"    "Hominoidea"    "Hominidae" "Homininae" "Homo"  "Homo sapiens"
"OTU191"    "Root"  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU192"    "cellular organisms"    ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
"OTU193"    "synthetic construct"   ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""  ""
ashishdamania commented 9 years ago

Sorry, it turns out because I only had two samples, I was not able to get the "distance" method to work correctly.