Open dridk opened 7 years ago
That interface supports newick format, all you need to do is use the ape function and write.newick of the tree component from your phyloseq object:
from https://github.com/joey711/phyloseq/issues/599
tree1 = phy_tree(physeq1)
ape::write.tree(tree1, "~/path/to/new/tree1.tree")
On Fri, Mar 17, 2017 at 8:48 AM, sacha schutz notifications@github.com wrote:
http://itol.embl.de/help.cgi is an awesome website to plot tree with metadata. I m trying to export phyloseq object to a file which can be read by ITOL.
What's the best way ? Is there any way to export phyloseq object ?
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Ok. It seems there are other format where metadata can be embeded. Any idea ?
http://itol.embl.de/help.cgi is an awesome website to plot tree with metadata. I m trying to export phyloseq object to a file which can be read by ITOL.
What's the best way ? Is there any way to export phyloseq object ?