automatic removal of Taxonomy of the OTUs removed after rarefy to even depths

joey711 / phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

http://joey711.github.io/phyloseq/

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automatic removal of Taxonomy of the OTUs removed after rarefy to even depths #769

Open alinawazfcc opened 7 years ago

alinawazfcc commented 7 years ago

Hi guys I rarefy my otu table to 4100 sample size and after rarefying to even depths, 1296 OTUs were removed because they are no longer present in any sample after random subsampling. Now I am wondering that is there a way to remove automatically the taxonomy of those removed OTUs from the TAX table?

Will very much appreciate the feedback

best Nawaz

CharlieMPhelps commented 7 years ago

I would like this info also!