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joey711 / phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
http://joey711.github.io/phyloseq/
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PLS-DA #853

Open AndreaQ7 opened 6 years ago

AndreaQ7 commented 6 years ago

Goodmornig everyone,

Is there a way to perform PLS-DA analysis starting from a phyloseq object? does it already exist a pipeline for this kind of analysis? thanks a lot

spholmes commented 6 years ago

Please look at page 24 of the F1000R workflow, https://f1000research.com/articles/5-1492/v2

there is a full example of using pls there.

On Mon, Dec 4, 2017 at 5:10 AM, AndreaQ7 notifications@github.com wrote:

Goodmornig everyone,

Is there a way to perform PLS-DA analysis starting from a phyloseq object? does it already exist a pipeline for this kind of analysis? thanks a lot

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-- Susan Holmes John Henry Samter Fellow in Undergraduate Education Professor, Statistics 2017-2018 CASBS Fellow, Sequoia Hall, 390 Serra Mall Stanford, CA 94305 http://www-stat.stanford.edu/~susan/

AndreaQ7 commented 6 years ago

Thank you a lot for your suggestion