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joey711 / shiny-phyloseq

An interactive web application for demonstrating and using phyloseq.
http://joey711.github.io/shiny-phyloseq
GNU General Public License v3.0
60 stars 45 forks source link

installation problem #49

Closed spholmes closed 10 years ago

spholmes commented 10 years ago

tools::source_url("https://raw.githubusercontent.com/joey711/shiny-phyloseq/master/install.R") SHA-1 hash of file is c089225c5190aebf0144b7ab77e32880e7590895 Error : objects ‘metadata’, ‘isTRUEorFALSE’, ‘isSingleString’ are not exported by 'namespace:IRanges' In addition: Warning message: package ‘phyloseq’ was built under R version 3.1.1 Error: package or namespace load failed for ‘phyloseq’

from user Kapelner, maybe version problems, he uses windows.

joey711 commented 10 years ago

Hmmm,

Well, I could worry about this, but I think it will fix itself when the new BioC release happens in about two weeks. If I remember correctly, they made a lot of changes to "the stack" of things that included IRanges. I suspect that is related. Also, the code above doesn't report the phyloseq version. Might be an old version of phyloseq. I should check the auto-install script again and see if I can guess where this minority of problems is coming from...

Thanks, Susan!

joey

joey711 commented 10 years ago

I can't reproduce this error. I will close this for now.

Post again here if this error persists through the upcoming BioC release (ver 3.0).

Thanks, Susan!

joey