Open sokoloko opened 7 years ago
For some reason, the current version of Shiny-phyloseq doesn't find the packages
shinythemes, rmarkdown and network3D
Installing these by hand:
install.packages("shinythemes")
install.packages("networkD3")
install.packages("rmarkdown")
then rerunning
shiny::runGitHub("shiny-phyloseq","joey711")
Thanks! I'll take a look and update it
I'm being picky because I am preparing to show this at NIPS tomorrow in front of 6,000 people, I think I am going to minimovie it rather than crash interactively for such a big crowd...
On Wed, Dec 7, 2016 at 6:54 PM, Paul J. McMurdie notifications@github.com wrote:
Thanks! I'll take a look and update it
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/joey711/shiny-phyloseq/issues/68#issuecomment-265520438, or mute the thread https://github.com/notifications/unsubscribe-auth/ABJcvWrYkCG0NUSQDJUsM853yQI78llBks5rFvLSgaJpZM4Kdkoq .
-- Susan Holmes Professor, Statistics and BioX John Henry Samter Fellow in Undergraduate Education Sequoia Hall, 390 Serra Mall Stanford, CA 94305 http://www-stat.stanford.edu/~susan/
good idea (minimovie). Not worth the risk.
Btw I have some updates brewing. The new "shiny modules" are a great new addition for complex apps like shiny-phyloseq.
Well, I wasn't able to make the mini-movie, this old bug with the provenance tracking cam back to haunt me:
Error in which: argument to 'which' is not logical
appears in the white screen when doing the provenance tracking or display code option...
doesn't matter, I'll point to Github and hope we have a fix soon.
On Wed, Dec 7, 2016 at 12:09 PM, Paul J. McMurdie notifications@github.com wrote:
good idea (minimovie). Not worth the risk.
Btw I have some updates brewing. The new "shiny modules" are a great new addition for complex apps like shiny-phyloseq.
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/joey711/shiny-phyloseq/issues/68#issuecomment-265559319, or mute the thread https://github.com/notifications/unsubscribe-auth/ABJcvZWq6ADet-WIRcK_FFnuJVr-tSE0ks5rFxKRgaJpZM4Kdkoq .
-- Susan Holmes Professor, Statistics and BioX John Henry Samter Fellow in Undergraduate Education Sequoia Hall, 390 Serra Mall Stanford, CA 94305 http://www-stat.stanford.edu/~susan/
Hello @joey711 @spholmes and thank you for phyloseq.
On previous R versions shiny worked, but since I upgraded to R 3.3.1 it doesn't.
shinythemes
seems to be missing. Is there a solution, please?Best, Sergios