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joezuntz / pycamb

Python bindings for the Code for Anisotropies in the Microwave Background (CAMB)
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pycamb installation #7

Open neuronphysics opened 8 years ago

neuronphysics commented 8 years ago

Hi there,

I have been trying to install pycamb but it fails due to incompatibility of CAMB version with pycamb. First I have built the latest version of camb from this website : http://camb.info/sources/downred/downld.php and then I tried to install pycamb by making a directory named 'camb' in the source directory and copying all the file with suffix .f90 and .mod in this directory but I have got this following error message

x86_64-linux-gnu-gcc: build/src.linux-x86_64-2.7/src/_pycambmodule.c In file included from /vol/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1781:0, from /vol/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /vol/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.linux-x86_64-2.7/fortranobject.h:13, from build/src.linux-x86_64-2.7/src/_pycambmodule.c:19: /vol/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]

warning "Using deprecated NumPy API, disable it by " \

^ build/src.linux-x86_64-2.7/src/_pycambmodule.c: In function ‘f2py_setup_pycamb_mod’: build/src.linux-x86_64-2.7/src/_pycambmodule.c:1428:38: warning: assignment from incompatible pointer type [enabled by default] f2py_pycamb_mod_def[i_f2py++].func = matter_power_sigma8; ^ build/src.linux-x86_64-2.7/src/_pycambmodule.c:1429:38: warning: assignment from incompatible pointer type [enabled by default] f2py_pycamb_mod_def[i_f2py++].func = transfers; ^ build/src.linux-x86_64-2.7/src/_pycambmodule.c:1430:38: warning: assignment from incompatible pointer type [enabled by default] f2py_pycamb_mod_def[i_f2py++].func = transfers_sigma8; ^ build/src.linux-x86_64-2.7/src/_pycambmodule.c:1431:38: warning: assignment from incompatible pointer type [enabled by default] f2py_pycamb_mod_def[i_f2py++].func = matter_power_kh; ^ build/src.linux-x86_64-2.7/src/_pycambmodule.c:1433:38: warning: assignment from incompatible pointer type [enabled by default] f2py_pycamb_mod_def[i_f2py++].func = matter_power; ^ build/src.linux-x86_64-2.7/src/_pycambmodule.c:1434:38: warning: assignment from incompatible pointer type [enabled by default] f2py_pycamb_mod_def[i_f2py++].func = transfers_k; ^ build/src.linux-x86_64-2.7/src/_pycambmodule.c: At top level: build/src.linux-x86_64-2.7/src/_pycambmodule.c:145:12: warning: ‘f2py_size’ defined but not used [-Wunused-function] static int f2py_size(PyArrayObject* var, ...) ^ compiling Fortran 90 module sources creating build/temp.linux-x86_64-2.7/pycamb Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O2 -march=x86-64 -DMS_WIN64 -mtune=generic -msse2 Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O2 -march=x86-64 -DMS_WIN64 -mtune=generic -msse2 Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O2 -march=x86-64 -DMS_WIN64 -mtune=generic -msse2 creating build/temp.linux-x86_64-2.7/camb creating build/temp.linux-x86_64-2.7/src compile options: '-I/vol/anaconda/lib/python2.7/site-packages/numpy/core/include -Ibuild/src.linux-x86_64-2.7 -I/vol/anaconda/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c' extra options: '-Jbuild/temp.linux-x86_64-2.7/pycamb -Ibuild/temp.linux-x86_64-2.7/pycamb' extra f90 options: '-ffree-line-length-none -O0 -g -Dintp=npy_intp -fopenmp' gfortran:f90: camb/constants.f90 camb/constants.f90:12.11:

   use precision
       1

Fatal Error: File 'precision.mod' opened at (1) is not a GNU Fortran module file camb/constants.f90:12.11:

   use precision
       1

Fatal Error: File 'precision.mod' opened at (1) is not a GNU Fortran module file error: Command "/usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O2 -march=x86-64 -DMS_WIN64 -mtune=generic -msse2 -I/vol/anaconda/lib/python2.7/site-packages/numpy/core/include -Ibuild/src.linux-x86_64-2.7 -I/vol/anaconda/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c -c camb/constants.f90 -o build/temp.linux-x86_64-2.7/camb/constants.o -Jbuild/temp.linux-x86_64-2.7/pycamb -Ibuild/temp.linux-x86_64-2.7/pycamb -ffree-line-length-none -O0 -g -Dintp=npy_intp -fopenmp" failed with exit status 1 z

I don't know how I can make Fortran compiler compatible, any suggestion for installation would be appreciated