🐛 ModuleNotFoundError: No module named 'sklearn.externals.joblib' in clodsa/augmentors/folderKerasSemanticSegmentationAugmentor.py

[jpainam]

Hi, the package sklearn seems to have updated their .externals module and remove .joblib. joblib now is an independent package. But clodsa still import Parallel from sklearn.externals.joblib. Kindly update the imports

Traceback (most recent call last):
  File "data_augmentation_with_annotation.py", line 1, in <module>
    from clodsa.augmentors.augmentorFactory import createAugmentor
  File "/home/fst/anaconda3/lib/python3.7/site-packages/clodsa/__init__.py", line 2, in <module>
    from . import augment
  File "/home/fst/anaconda3/lib/python3.7/site-packages/clodsa/augment.py", line 2, in <module>
    from .augmentors.augmentorFactory import createAugmentor
  File "/home/fst/anaconda3/lib/python3.7/site-packages/clodsa/augmentors/__init__.py", line 1, in <module>
    from .augmentorFactory import *
  File "/home/fst/anaconda3/lib/python3.7/site-packages/clodsa/augmentors/augmentorFactory.py", line 2, in <module>
    from .augmentorsList import Augmentors
  File "/home/fst/anaconda3/lib/python3.7/site-packages/clodsa/augmentors/augmentorsList.py", line 3, in <module>
    from .folderKerasSemanticSegmentationAugmentor import FolderKerasSemanticSegmentationAugmentor
  File "/home/fst/anaconda3/lib/python3.7/site-packages/clodsa/augmentors/folderKerasSemanticSegmentationAugmentor.py", line 10, in <module>
    from sklearn.externals.joblib import Parallel, delayed
ModuleNotFoundError: No module named 'sklearn.externals.joblib'

Trying to reinstall clodsa gives this output

pip install clodsa
Looking in indexes: https://pypi.tuna.tsinghua.edu.cn/simple/
Requirement already satisfied: clodsa in /home/fst/anaconda3/lib/python3.7/site-packages (1.2.39)
Requirement already satisfied: Keras in /home/fst/anaconda3/lib/python3.7/site-packages (from clodsa) (2.4.3)
Requirement already satisfied: commentjson in /home/fst/anaconda3/lib/python3.7/site-packages (from clodsa) (0.8.3)
Requirement already satisfied: scipy in /home/fst/anaconda3/lib/python3.7/site-packages (from clodsa) (1.5.2)
Requirement already satisfied: mahotas in /home/fst/anaconda3/lib/python3.7/site-packages (from clodsa) (1.4.10)
Requirement already satisfied: numpy in /home/fst/anaconda3/lib/python3.7/site-packages (from clodsa) (1.17.5)
Requirement already satisfied: h5py in /home/fst/anaconda3/lib/python3.7/site-packages (from clodsa) (2.10.0)
Requirement already satisfied: imutils in /home/fst/anaconda3/lib/python3.7/site-packages (from clodsa) (0.5.3)
Requirement already satisfied: progressbar2 in /home/fst/anaconda3/lib/python3.7/site-packages (from clodsa) (3.51.4)
Requirement already satisfied: scikit-learn in /home/fst/anaconda3/lib/python3.7/site-packages (from clodsa) (0.23.2)
Requirement already satisfied: pyyaml in /home/fst/anaconda3/lib/python3.7/site-packages (from Keras->clodsa) (5.3.1)
Requirement already satisfied: lark-parser<0.8.0,>=0.7.1 in /home/fst/anaconda3/lib/python3.7/site-packages (from commentjson->clodsa) (0.7.8)
Requirement already satisfied: six in /home/fst/anaconda3/lib/python3.7/site-packages (from h5py->clodsa) (1.15.0)
Requirement already satisfied: python-utils>=2.3.0 in /home/fst/anaconda3/lib/python3.7/site-packages (from progressbar2->clodsa) (2.4.0)
Requirement already satisfied: joblib>=0.11 in /home/fst/anaconda3/lib/python3.7/site-packages (from scikit-learn->clodsa) (0.17.0)
Requirement already satisfied: threadpoolctl>=2.0.0 in /home/fst/anaconda3/lib/python3.7/site-packages (from scikit-learn->clodsa) (2.1.0)

[joheras]

This issue has been fixed with the new version of Clodsa.

pip install clodsa==1.2.43

Best, Jónathan