loadFCS fails on very large FCS files

GoogleCodeExporter commented 9 years ago

What steps will reproduce the problem?
1. run loadFCS on the following file 
'/Volumes/HD2/data/flow/current/spleen/Spleen_D2_Panel2_Uninf_2.fcs' on lister
2.
3.

What is the expected output? What do you see instead?
No output expected. Get ValueError: total size of new array must be unchanged

Please use labels and text to provide additional information.

Original issue reported on code.google.com by cliburn....@gmail.com on 1 Sep 2009 at 6:17

GoogleCodeExporter commented 9 years ago

hrmm, this is interesting, but I'm not sure whats wrong right now.
here's some debug statements added, and the output from loading two different 
fcs
files (using float data):

old_cmv1 (good values)       
ss: 4755 29471114
num_items 7366590
len tmp: 7366590 (7366590,)
tot (passed arg): 409255
len(tmp)/tot (number of markers): 18
float(len(tmp)/tot) (number of markers): 18.0
number of extra: 0

spleen
ss: 0 164134675
num_items 41033669
len tmp: 41033669 (41033669,)
tot (passed arg): 2413678
len(tmp)/tot (number of markers): 17
float(len(tmp)/tot) (number of markers): 17.0004735512
number of extra: 1143

there should be 18 markers, which means something is wrong here....

Original comment by Jacob.Frelinger@gmail.com on 15 Nov 2009 at 10:46

GoogleCodeExporter commented 9 years ago

Sigh, I beleive this is the same issue as issue 17, which I've just fixed, (the 
text
keyword is begindata not beginadata...)
 This now loads fine.

Original comment by Jacob.Frelinger@gmail.com on 19 Apr 2010 at 12:11

Changed state: fixed

GoogleCodeExporter commented 9 years ago

Original comment by Jacob.Frelinger@gmail.com on 30 Jun 2011 at 3:02

Changed state: Verified

johnbachman / py-fcm

loadFCS fails on very large FCS files #7