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johnbachman / py-fcm

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scatters are wrong after loading file - compensation error? #8

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
What steps will reproduce the problem?
1. use loadFCS on any file in /Volumes/HD2/data/flow/cimt/ID07_donorX and 
ID09_donorX on 
lister
2. do a heatmap
3.

What is the expected output? What do you see instead?
Plots are clearly screwy - cf load file in Flow, filter unwanted channels, 
compensate and logicle 
transform - gives correct figures

Please use labels and text to provide additional information.

Original issue reported on code.google.com by cliburn....@gmail.com on 1 Sep 2009 at 6:23

GoogleCodeExporter commented 9 years ago 
umm, are we sure the compensation is wrong?  the heatmap function forces the 
axises
to be the same length so all the markers vs the scatters looks bad, but just 
plotting
them using pylab directly looks okay to me. see attached figure.

Original comment by Jacob.Frelinger@gmail.com on 18 Nov 2009 at 3:06

Attachments:

GoogleCodeExporter commented 9 years ago 
never mind, looking at cd3 vs cd8 does look bad.

Original comment by Jacob.Frelinger@gmail.com on 18 Nov 2009 at 3:15

GoogleCodeExporter commented 9 years ago 
hould be fixed.  please check and make sure it works as expected for you.

Original comment by Jacob.Frelinger@gmail.com on 18 Nov 2009 at 4:09