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johnlees / 23andme-impute

Scripts and advice to run IMPUTE2 on 23 and me raw data
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Where to get the used ref files? #2

Closed oguzeroglu closed 5 years ago

oguzeroglu commented 5 years ago

Hello,

I'm confused about where to download the hardcoded ref files such as: ALL_1000G_phase1integrated_v3_chr1_impute.legend.gz.gz

Is there a public access URL from where I can download those?

Thanks!

johnlees commented 5 years ago

There's some more information listed here: http://www.johnlees.me/blog/2014/03/18/impute-your-whole-genome-from-23andme-data/

But this is all a bit old. You might consider alternatives e.g. https://www.impute.me/