search

johnmay / efficient-bits

Self-contained projects for code examples from efficientbits.blogspot.com posts.
BSD 2-Clause "Simplified" License
3 stars 1 forks source link

fp-idx build and run problems #1

Closed tantrev closed 5 years ago

tantrev commented 5 years ago

Hello! I've been trying to get your fp-idx programs running and have run into a couple of build problems:

  1. The "pom.xml" file seems to reference versions of "2.0-SNAPSHOT" modules that no longer exist. I've been able to get these errors rectified by changing the versions to just "2.0".
  2. The "make-stubs.sh" seems to reference several stub files that no longer exist. It seems these errors can be safely ignored.

Most importantly though, when I try directly running the "java -cp target/nfp.jar org.openscience.cdk.nfp.SimSearch" command with an index file, the following error is returned:

Exception in thread "main" java.lang.NullPointerException
    at org.openscience.cdk.nfp.SimilarityIndex.top(SimilarityIndex.java:103)
    at org.openscience.cdk.nfp.SimSearch.main(SimSearch.java:172)

Any idea what I'm doing wrong? I'm sure it's something painfully obvious. Thank you in advance.

tantrev commented 5 years ago

Nevermind, I figured it out. 👍 I just had to specify "-idx" and "-min" for the "java -cp target/nfp.jar org.openscience.cdk.nfp.SimSearch" command. Silly me!