Remaining issues in LORIS based on this packaging attempt

[johnsaigle]

Results of test_package.sh i.e. lintian:

N: Using profile ubuntu/main. N: Setting up lab in /tmp/temp-lintian-lab-1eOGWqGLeH ... N: Starting on group loris/21.0.0 N: Unpacking packages in group loris/21.0.0 N: ---- N: Processing binary package loris (version 21.0.0, arch all) ... E: loris: changelog-file-missing-in-native-package N: N: Each Debian package (which provides a /usr/share/doc/ directory) N: has to install a changelog file. Since this package seems to be a native N: Debian package (i.e., there is no upstream source), the file should N: usually be installed as /usr/share/doc//changelog.gz N:
N: Note that Lintian may emit this tag if the changelog exists, but it does N: not look like a Debian changelog. N:
N: Refer to Debian Policy Manual section 12.7 (Changelog files) for N: details. N:
N: Severity: important, Certainty: certain N:
N: Check: changelog-file, Type: binary N: E: loris: no-copyright-file N: N: Each binary package has to include a plain file N: /usr/share/doc//copyright N:
N: Refer to Debian Policy Manual section 12.5 (Copyright information) for N: details. N:
N: Severity: serious, Certainty: certain N:
N: Check: copyright-file, Type: binary N: E: loris: description-too-short LORISSSS N: N: The description contains only a single word. It is likely that the N: description won't be very clear for the user. N:
N: Refer to Debian Developer's Reference section 6.2.2 (The package N: synopsis, or short description) for details. N:
N: Severity: serious, Certainty: certain N:
N: Check: description, Type: binary, udeb N: E: loris: extended-description-is-empty N: N: The extended description (the lines after the first line of the N: "Description:" field) is empty. N:
N: Refer to Debian Policy Manual section 3.4 (The description of a package) N: for details. N:
N: Severity: serious, Certainty: certain N:
N: Check: description, Type: binary, udeb N: W: loris: non-standard-dir-perm usr/ 0775 != 0755 N: N: The directory has a mode different from 0755, and it's not one of the N: known exceptions. N:
N: Refer to Debian Policy Manual section 10.9 (Permissions and owners) for N: details. N:
N: Severity: normal, Certainty: possible N:
N: Check: files, Type: binary, udeb N: W: loris: non-standard-dir-perm usr/share/ 0775 != 0755 W: loris: non-standard-dir-perm usr/share/loris/ 0775 != 0755 W: loris: non-standard-file-perm usr/share/loris/CONTRIBUTING.md 0664 != 0644 N: N: The file has a mode different from 0644. In some cases this is N: intentional, but in other cases this is a bug. N:
N: Refer to Debian Policy Manual section 10.9 (Permissions and owners) for N: details. N:
N: Severity: normal, Certainty: certain N:
N: Check: files, Type: binary, udeb N: W: loris: non-standard-file-perm usr/share/loris/Dockerfile.test.db 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/Dockerfile.test.php7 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/Dockerfile.test.php7.debug 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/LICENSE 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/Makefile 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/Procfile 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/README.CentOS6.md 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/README.Mac.md 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/README.md 0664 != 0644 W: loris: non-standard-dir-perm usr/share/loris/SQL/ 0775 != 0755 W: loris: non-standard-file-perm usr/share/loris/SQL/0000-00-00-schema.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/0000-00-01-Permission.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/0000-00-02-Menus.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/0000-00-03-ConfigTables.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/0000-00-04-Help.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/0000-00-05-ElectrophysiologyTables.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/9999-99-99-drop_tables.sql 0664 != 0644 W: loris: non-standard-dir-perm usr/share/loris/SQL/Archive/ 0775 != 0755 W: loris: non-standard-dir-perm usr/share/loris/SQL/Archive/14.12/ 0775 != 0755 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/14.12/2014-10-21-AddDataIntegrityFlagandInstrumentManagerToLorisMenu.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/14.12/2014-10-21_data_team_helper_help_update.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/14.12/2014-10-24-RemoveColumnThreshold.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/14.12/2014-10-24-UpdateConfigDescriptions.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/14.12/2014-11-13-ImagingBrowserPermissions.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/14.12/2014-11-13-RemoveUnusedPermissions.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/14.12/2014-11-17-StatisticModules.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/14.12/2014-11-18-DTI_feedback_comments_part2.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/14.12/2014-11-21-ConfigurationVersionTwo.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/14.12/2014-11-25-DicomArchivePermission.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/14.12/2014-11-25-MRIViolatedScansPermission.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/14.12/2014-12-02-ConfigChristineDescriptions.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/14.12/2014-12-03-UpdatePermissions.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/14.12/2014-12-08-RadiologicalReview_Filterfix2.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/14.12/2014-12-09-Radiology_review_history.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/14.12/2014-12-12-TidyMenuPermissions.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/14.12/2014-12-15-DocumentRepositoryDataDir.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/14.12/2014-12-17-History_Mask_Password.sql 0664 != 0644 W: loris: non-standard-dir-perm usr/share/loris/SQL/Archive/15.04/ 0775 != 0755 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.04/2014-12-15-password_hash.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.04/2015-01-12-DocRepoPermissions.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.04/2015-01-15_UpdateFeedbackMRI.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.04/2015-01-16-GenomicBrowser.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.04/2015-02-02-AddInstrumentResettingToConfig.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.04/2015-02-06-ExaminerModule.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.04/2015-02-16-SupplementalSessionStatus.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.04/2015-02-16_MRI_upload_table_new_column.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.04/2015-03-11_New_MRI_upload_Config_option.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.04/2015-03-17-TrainingModule.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.04/2015-03-9-Notification_table_New_Columns.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.04/2015-04-04-ServerProcessLauncher.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.04/2015-04-07_DropFKuser_login_history.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.04/2015-04-14_imaging_upload_auto_launch_config_option.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.04/2015-04-16_MRI_upload_table_modification.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.04/2015-04-20-UseScanDoneConfigOption.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.04/2015-04-24-Add_Missing_Config_Settings.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.04/2015-04-27_MRI_upload_phantom_option.sql 0664 != 0644 W: loris: non-standard-dir-perm usr/share/loris/SQL/Archive/15.10/ 0775 != 0755 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.10/2015-03-20_MRIViolationsResolved.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.10/2015-06-11-subprojectConfigTable.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.10/2015-06-13_ModifyTarchiveSeriesTableToIncludePET.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.10/2015-08-05-UpdateMRIUploderBreadcrumb.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.10/2015-08-06-ClarifyMRIfeedbacks.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.10/2015-08-06-CleanUpMRItables.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.10/2015-08-06-ConflictResolverRemoveRecyclingBin.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.10/2015-08-06-removeClassifyAlgorithm.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.10/2015-08-08-ConflictResolver_InProgress.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.10/2015-08-11-AddRecruitmentTargetToSubproject.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.10/2015-08-11-projectConfigTable.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.10/2015-09-14-DropFeedbackBvlTypesSite.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.10/2015-10-13-GeometricDistortionFix.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.10/2015-10-30-MRIUploaderRefactorPerm.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/15.10/2015-10-30-alterProject.sql 0664 != 0644 W: loris: non-standard-dir-perm usr/share/loris/SQL/Archive/16.0/ 0775 != 0755 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2015-11-02-linksTables.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2015-11-18-Missing_LorisMenuPermission.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2015-11-26-MenuPrettyURLs.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2015-11-27-AddJWTKeyConfig.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2015-11-27_conflict_resolver_menu_item_permission.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2015-12-01-ConfigSetting-StudyDescription.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-01-18-Acknowledgements.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-01-18-RemoveShowTimingFromConfig.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-01-19-EmptyQueries.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-01-22-CurrentlyProcessedRenamedInMRIUploadTable.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-01-22-IsValidatedRenamedInMRIUploadTable.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-02-16-CriticalConflictsResolverBugFix.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-02-25-AddVerboseFlagToNotificationSpoolTable.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-02-29-fix_imaging_uploader_permission.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-03-01-showPearError.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-03-02-Add-Genomic-Files-GWAS-split-SNP.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-03-03-addindexes.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-03-04-HelpContent.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-03-09-Data_Release_Module.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-03-10-DefaultMRIUploadPath.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-03-10-MoveSelectedTo_files_qcstatus_table.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-03-22-ConfigRemoveLastSlashFromURL.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-03-22-InstrumentListOrdering.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-03-29-DataQuery_permission.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-04-01-DQTHelpContent.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-04-01-GenomicBrowser-CPG.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-04-02-GenomicBrowser-FileUploader.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-04-04-MenuPrettyURL-server_processes_manager.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-04-05-InsertingCanBeNull.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-04-06-GenomicBrowserHelpContent.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-04-20-Genomic_upload_permission.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-04-29-Genomic_Browser-Help_text 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-04-29-ImagingUploaderUpdateHelp.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-05-17-CandidateLorisMenuPermissions.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-05-27-Project_and_Subproject_help.sql.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.0/2016-06-08-MoveAcknowledgementsMenu.sql 0664 != 0644 W: loris: non-standard-dir-perm usr/share/loris/SQL/Archive/16.1/ 0775 != 0755 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.1/2016-06-27-Media.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.1/2016-07-12-SNRParameterType.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/16.1/2016-07-12-UpdateStudyImage.sql 0664 != 0644 W: loris: non-standard-dir-perm usr/share/loris/SQL/Archive/17.0/ 0775 != 0755 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/17.0/2016-05-10-HelpContentFixCharacters.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/17.0/2016-06-22-UpdateGithubExternalLinks.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/17.0/2016-06-29-adding_filetypes_to_new_table.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/17.0/2016-07-06-UniquePermissionname.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/17.0/2016-07-07-AddTarchiveSeriesIDTotarchive_filesTable.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/17.0/2016-08-01-UpdateHelpChars.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/17.0/2016-08-18-AddCaveatFlag_SessionTable.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/17.0/2016-08-18-DataReleaseHelpContent.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/17.0/2016-08-18-HelpTableDefaultCreatedValue.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/17.0/2016-08-18-RemovingTitleFromAcknowledgements.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/17.0/2016-08-19-IssueTracker.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/17.0/2016-08-19-SelectedTrueFalse_fileqcstatusTable.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/17.0/2016-08-29-AddForeignKeyToCertification.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/17.0/2016-09-13-AddScannerIDInFiles.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/17.0/2016-09-13-Add_SNP_MinorAllele.sql 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/SQL/Archive/17.0/2016-09-13-Visit_Windows_add_primary.sql 0664 != 0644 W: loris: non-standard-file-perm 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0755 W: loris: non-standard-file-perm usr/share/loris/htdocs/bootstrap/config.json 0664 != 0644 W: loris: non-standard-dir-perm usr/share/loris/htdocs/bootstrap/css/ 0775 != 0755 W: loris: non-standard-file-perm usr/share/loris/htdocs/bootstrap/css/bootstrap.min.css 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/bootstrap/css/custom-css.css 0664 != 0644 W: loris: non-standard-dir-perm usr/share/loris/htdocs/bootstrap/fonts/ 0775 != 0755 W: loris: non-standard-file-perm usr/share/loris/htdocs/bootstrap/fonts/glyphicons-halflings-regular.eot 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/bootstrap/fonts/glyphicons-halflings-regular.svg 0664 != 0644 W: loris: duplicate-font-file usr/share/loris/htdocs/bootstrap/fonts/glyphicons-halflings-regular.ttf also in fonts-glewlwyd N: N: This package appears to include a font file that is already provided by N: another package in Debian. Ideally it should instead depend on the N: relevant font package. If the application in this package loads the font N: file by name, you may need to include a symlink pointing to the file N: name of the font in its Debian package. N:
N: Sometimes the font package containing the font is huge and you only need N: one font. In that case, you have a few options: modify the package (in N: conjunction with upstream) to use libfontconfig to find the font that N: you prefer but fall back on whatever installed font is available, ask N: that the font package be split apart into packages of a more reasonable N: size, or add an override and be aware of the duplication when new N: versions of the font are released. N:
N: Severity: normal, Certainty: possible N:
N: Check: files, Type: binary, udeb N: W: loris: non-standard-file-perm usr/share/loris/htdocs/bootstrap/fonts/glyphicons-halflings-regular.ttf 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/bootstrap/fonts/glyphicons-halflings-regular.woff 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/bootstrap/fonts/glyphicons-halflings-regular.woff2 0664 != 0644 W: loris: non-standard-dir-perm usr/share/loris/htdocs/bootstrap/js/ 0775 != 0755 W: loris: non-standard-file-perm usr/share/loris/htdocs/bootstrap/js/bootstrap.min.js 0664 != 0644 W: loris: non-standard-dir-perm usr/share/loris/htdocs/css/ 0775 != 0755 W: loris: non-standard-file-perm usr/share/loris/htdocs/css/auto-complete.css 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/css/c3.css 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/css/jquery-ui-1.10.4.custom.css 0664 != 0644 W: loris: non-standard-file-perm 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0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/css/overcast/images/ui-bg_glass_35_dddddd_1x400.png 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/css/overcast/images/ui-bg_glass_60_eeeeee_1x400.png 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/css/overcast/images/ui-bg_inset-hard_75_999999_1x100.png 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/css/overcast/images/ui-bg_inset-soft_50_c9c9c9_1x100.png 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/css/overcast/images/ui-icons_3383bb_256x240.png 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/css/overcast/images/ui-icons_454545_256x240.png 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/css/overcast/images/ui-icons_70b2e1_256x240.png 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/css/overcast/images/ui-icons_999999_256x240.png 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/css/overcast/images/ui-icons_fbc856_256x240.png 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/css/overcast/jquery-ui-1.10.4.custom.css 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/css/overcast/jquery-ui-1.10.4.custom.min.css 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/css/panel.css 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/css/public_layout.css 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/css/simple-sidebar.css 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/direct.css 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/feedback_mri_popup.php 0664 != 0644 W: loris: symlink-ends-with-slash usr/share/loris/htdocs/fontawesome ./../node_modules/@fortawesome/fontawesome-free/ N: N: This symlink ends with a slash (/). This is in violation of policy, N: where it is stated that symlinks should be as short as possible N:
N: If you use debhelper, running dh_link after creating the package N: structure will fix this problem for you. N:
N: Refer to Debian Policy Manual section 10.5 (Symbolic links) for details. N:
N: Severity: minor, Certainty: certain N:
N: Check: files, Type: binary, udeb N: E: loris: symlink-contains-spurious-segments usr/share/loris/htdocs/fontawesome ./../node_modules/@fortawesome/fontawesome-free/ N: N: The symbolic link has needless segments like ".." and "." in the middle. N: These are unneeded and make the link longer than it could be, which is N: in violation of policy. They can also cause problems in the presence of N: symlinked directories. N:
N: If you use debhelper, running dh_link after creating the package N: structure will fix this problem for you. N:
N: Refer to Debian Policy Manual section 10.5 (Symbolic links) for details. N:
N: Severity: important, Certainty: certain N:
N: Check: files, Type: binary, udeb N: W: loris: non-standard-dir-perm usr/share/loris/htdocs/images/ 0775 != 0755 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/GitHub-Mark-Light-64px.png 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/LORIS_logo.png 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/LORIS_logo.svg 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/LORIS_logo_white.svg 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/Wolff_transparent_small.png 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/at.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/book.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/calendar.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/check.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/check_blue.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/copy.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/cut.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/default.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/delete.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/down.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/favicon.ico 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/folder.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/folder_add.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/folder_expand.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/help.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/help2.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/home-icon.png 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/left.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/list.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/list2.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/load.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/locked.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/locked.jpeg 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/mail.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/minus.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/mni_icon.ico 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/mni_logo.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/mni_logo_blue.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/mni_logo_transparent.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/neuro_logo_blue.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/neurorgb_web.jpg 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/new.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/open.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/page_title.jpg 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/palette.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/palette2.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/pencil.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/print.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/query_plan.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/right.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/search.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/selected.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/shim.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/tabBg.png 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/tabLeft.png 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/tabRight.png 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/tabSelectedBg.png 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/tabSelectedLeft.png 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/tabSelectedRight.png 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/title_background.jpg 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/transfer.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/uc_animated.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/uc_animated_large.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/uncheck.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/unlocked.jpeg 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/up.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/xml.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/zip.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/zoom_in.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/images/zoom_out.gif 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/index.php 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/installdb.php 0664 != 0644 W: loris: non-standard-dir-perm usr/share/loris/htdocs/js/ 0775 != 0755 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/.eslintrc.json 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/advancedMenu.js 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/c3.min.js 0664 != 0644 W: loris: non-standard-dir-perm usr/share/loris/htdocs/js/components/ 0775 != 0755 W: loris: package-contains-vcs-control-file usr/share/loris/htdocs/js/components/.gitignore N: N: The package contains a VCS control file such as .(cvs|git|hg)ignore. N: Files such as these are used by revision control systems to, for N: example, specify untracked files it should ignore or inventory files. N: This file is generally useless in an installed package and was probably N: installed by accident. N:
N: Severity: normal, Certainty: certain N:
N: Check: files, Type: binary, udeb N: W: loris: non-standard-file-perm usr/share/loris/htdocs/js/components/.gitignore 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/d3.min.js 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/filterControl.js 0664 != 0644 W: loris: non-standard-dir-perm usr/share/loris/htdocs/js/flot/ 0775 != 0755 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/flot/jquery.flot.min.js 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/helpHandler.js 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/instrument_form_control.js 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/invalid_form_scroll.js 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/jquery.csv.js 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/jquery.dynamictable.js 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/jquery.fileupload.js 0664 != 0644 W: loris: non-standard-dir-perm usr/share/loris/htdocs/js/jquery/ 0775 != 0755 W: loris: non-standard-dir-perm usr/share/loris/htdocs/js/jquery/datepicker/ 0775 != 0755 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/jquery/datepicker/datepicker.css 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/jquery/datepicker/jquery.datepicker.js 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/jquery/datepicker/jquery.datepicker.min.js 0664 != 0644 W: loris: embedded-javascript-library usr/share/loris/htdocs/js/jquery/jquery-1.11.0.min.js please use libjs-jquery N: N: This package contains an embedded copy of JavaScript libraries that are N: now available in their own packages (for example, JQuery, Prototype, N: Mochikit or "Cropper"). Please depend on the appropriate package and N: symlink the library into the appropriate location. N:
N: Refer to Debian Policy Manual section 4.13 (Convenience copies of code) N: for details. N:
N: Severity: normal, Certainty: possible N:
N: Check: files, Type: binary, udeb N: W: loris: non-standard-file-perm usr/share/loris/htdocs/js/jquery/jquery-1.11.0.min.js 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/jquery/jquery-ui-1.10.4.custom.min.js 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/jquery/jquery.autocomplete.js 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/jquery/jquery.csv.js 0664 != 0644 W: loris: non-standard-dir-perm usr/share/loris/htdocs/js/jszip/ 0775 != 0755 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/jszip/jszip.min.js 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/loris.js 0664 != 0644 W: loris: non-standard-dir-perm usr/share/loris/htdocs/js/modernizr/ 0775 != 0755 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/modernizr/modernizr.js 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/modernizr/modernizr.min.js 0664 != 0644 W: loris: non-standard-dir-perm usr/share/loris/htdocs/js/modules/ 0775 != 0755 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/modules/direct_entry.js 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/modules/dynamic_table.table.js 0664 != 0644 W: loris: embedded-javascript-library usr/share/loris/htdocs/js/modules/mustache.js please use libjs-mustache W: loris: non-standard-file-perm usr/share/loris/htdocs/js/modules/mustache.js 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/polyfills.js 0664 != 0644 W: loris: non-standard-dir-perm usr/share/loris/htdocs/js/shims/ 0775 != 0755 W: loris: non-standard-dir-perm usr/share/loris/htdocs/js/shims/FlashCanvas/ 0775 != 0755 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/shims/FlashCanvas/canvas2png.js 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/shims/FlashCanvas/flashcanvas.js 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/shims/FlashCanvas/flashcanvas.swf 0664 != 0644 W: loris: non-standard-dir-perm usr/share/loris/htdocs/js/shims/FlashCanvasPro/ 0775 != 0755 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/shims/FlashCanvasPro/canvas2png.js 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/shims/FlashCanvasPro/flash10canvas.swf 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/shims/FlashCanvasPro/flash9canvas.swf 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/shims/FlashCanvasPro/flashcanvas.js 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/shims/canvas-blob.js 0664 != 0644 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/shims/color-picker.js 0664 != 0644 W: loris: non-standard-dir-perm usr/share/loris/htdocs/js/shims/combos/ 0775 != 0755 W: loris: non-standard-file-perm usr/share/loris/htdocs/js/shims/combos/1.js 0664 != 0644 W: loris: non-standard-file-perm 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N: Severity: normal, Certainty: certain N:
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N:
N: Severity: normal, Certainty: certain N:
N: Check: scripts, Type: binary N: W: loris: script-not-executable usr/share/loris/tools/deprecated/dump_all_tables_data_only.sh W: loris: executable-not-elf-or-script usr/share/loris/tools/mri_violations_resolver.php N: N: This executable file is not an ELF format binary, and does not start N: with the #! sequence that marks interpreted scripts. It might be a sh N: script that fails to name /bin/sh as its shell, or it may be incorrectly N: marked as executable. Sometimes upstream files developed on Windows are N: marked unnecessarily as executable on other systems. N:
N: If you are using debhelper to build your package, running dh_fixperms N: will often correct this problem for you. N:
N: Refer to Debian Policy Manual section 10.4 (Scripts) for details. N:
N: Severity: normal, Certainty: certain N:
N: Check: scripts, Type: binary N: W: loris: executable-not-elf-or-script usr/share/loris/tools/recreate_conflicts.php W: loris: executable-not-elf-or-script usr/share/loris/tools/populate_visit_windows.php W: loris: executable-not-elf-or-script usr/share/loris/tools/CouchDB_MRI_Importer.php W: loris: executable-not-elf-or-script usr/share/loris/tools/delete_timepoint.php W: loris: executable-not-elf-or-script usr/share/loris/tools/CouchDB_Import_Demographics.php W: loris: executable-not-elf-or-script usr/share/loris/tools/generate_project_statistics_csv.php W: loris: executable-not-elf-or-script usr/share/loris/tools/populate_examiners_psc_rel.php W: loris: executable-not-elf-or-script usr/share/loris/tools/single_use/remove_logged_passwords.php W: loris: executable-not-elf-or-script usr/share/loris/tools/fix_timepoint_date_problems.php W: loris: executable-not-elf-or-script usr/share/loris/tools/delete_ignored_conflicts.php W: loris: executable-not-elf-or-script usr/share/loris/tools/assign_missing_instruments.php W: loris: executable-not-elf-or-script usr/share/loris/tools/CouchDB_Import_Instruments.php W: loris: executable-not-elf-or-script usr/share/loris/modules/document_repository/php/uploadcategory.class.inc W: loris: executable-not-elf-or-script usr/share/loris/modules/candidate_list/test/candidate_listTest.php W: loris: executable-not-elf-or-script usr/share/loris/tools/lorisform_parser.php W: loris: executable-not-elf-or-script usr/share/loris/tools/cleanup_mri_tables_for_19-0_release.php W: loris: executable-not-elf-or-script usr/share/loris/tools/DB_date_zeros_removal.php W: loris: executable-not-elf-or-script usr/share/loris/tools/CouchDB_Import_MRI.php W: loris: executable-not-elf-or-script usr/share/loris/tools/delete_candidate.php W: loris: executable-not-elf-or-script usr/share/loris/tools/config_to_db.php W: loris: executable-not-elf-or-script usr/share/loris/tools/CouchDB_Import_RadiologicalReview.php W: loris: executable-not-elf-or-script usr/share/loris/tools/CouchDB_Confirm_Integrity.php W: loris: executable-not-elf-or-script usr/share/loris/tools/detect_duplicated_commentids.php W: loris: executable-not-elf-or-script usr/share/loris/tools/generic_includes.php W: loris: executable-not-elf-or-script usr/share/loris/tools/exporters/data_dictionary_builder.php N: Finished processing group loris/21.0.0

[johnsaigle]

In short:

• We require Debian package files such as changelog, copyright, etc.
• LORIS file permissions are wonky and should be 755 or 644
• LORIS scripts that are executable need shebangs.