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johramoosa / deBruijn

de Bruijn decoy generator
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Issue with Enzyme and Composition Options (0/1/2) #1

Open publicfunctionsufiyan opened 11 months ago

publicfunctionsufiyan commented 11 months ago

I'm facing an issue with the deBruijn.jar tool. When using the command java -jar deBruijn.jar --input filename.fasta --output output.fasta --enzyme 0, I receive the error: "Wrong value. Option enzyme requires a value of the format: Integer: 0/1/2". The same problem occurs with the --composition option.

The documentation specifies that these options should accept 0/1/2: [--enzyme 0/1/2] (0=non specific, 1=trypsin (default), 2=chymotrypsin).

Any assistance on resolving this would be appreciated.

Thank you Sufiyan

patrick-willems commented 9 months ago

Same error here, no fix?

johramoosa commented 9 months ago

I will check and get back to you. Thanks for reporting the issue. Regards, Johra

On Wed, Oct 18, 2023 at 4:24 AM patrick-willems @.***> wrote:

Same error here, no fix?

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johramoosa commented 9 months ago

I will get back to you. Thanks for reporting the problem. Regards, Johra

On Thu, Aug 31, 2023 at 8:06 AM Muhammad Sufiyan @.***> wrote:

I'm facing an issue with the deBruijn.jar tool. When using the command java -jar deBruijn.jar --input filename.fasta --output output.fasta --enzyme 0, I receive the error: "Wrong value. Option enzyme requires a value of the format: Integer: 0/1/2". The same problem occurs with the --composition option.

The documentation specifies that these options should accept 0/1/2: [--enzyme 0/1/2] (0=non specific, 1=trypsin (default), 2=chymotrypsin).

Any assistance on resolving this would be appreciated.

Thank you Sufiyan

— Reply to this email directly, view it on GitHub https://github.com/johramoosa/deBruijn/issues/1, or unsubscribe https://github.com/notifications/unsubscribe-auth/AFMCP77U23YQHHPZ3HWHCQDXYB43HANCNFSM6AAAAAA4F62Y2I . You are receiving this because you are subscribed to this thread.Message ID: @.***>

johramoosa commented 9 months ago

Hello,

Thanks again for reporting the issue. It should work now. Let me know if you face any more issues.

Thanks, Johra

On Wed, Oct 18, 2023 at 10:31 AM johra moosa @.***> wrote:

I will get back to you. Thanks for reporting the problem. Regards, Johra

On Thu, Aug 31, 2023 at 8:06 AM Muhammad Sufiyan @.***> wrote:

I'm facing an issue with the deBruijn.jar tool. When using the command java -jar deBruijn.jar --input filename.fasta --output output.fasta --enzyme 0, I receive the error: "Wrong value. Option enzyme requires a value of the format: Integer: 0/1/2". The same problem occurs with the --composition option.

The documentation specifies that these options should accept 0/1/2: [--enzyme 0/1/2] (0=non specific, 1=trypsin (default), 2=chymotrypsin).

Any assistance on resolving this would be appreciated.

Thank you Sufiyan

— Reply to this email directly, view it on GitHub https://github.com/johramoosa/deBruijn/issues/1, or unsubscribe https://github.com/notifications/unsubscribe-auth/AFMCP77U23YQHHPZ3HWHCQDXYB43HANCNFSM6AAAAAA4F62Y2I . You are receiving this because you are subscribed to this thread.Message ID: @.***>