Closed sararselitsky closed 9 years ago
how would you see this working? i think it would be simplest if you just provided the colors up front, versus making the plotter map the cancer type names to colors internally. I can add an input style where you can just add the color to the encoded mutation (something like "V600M#ff0000" to make V600M a red color?)
Ok, that sounds good.
On Jan 12, 2015, at 1:08 PM, Jeremy Jay notifications@github.com wrote:
how would you see this working? i think it would be simplest if you just provided the colors up front, versus making the plotter map the cancer type names to colors internally. I can add an input style where you can just add the color to the encoded mutation (something like "V600M#ff0000" to make V600M a red color?)
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ok i've added this into the latest release: https://github.com/pbnjay/lollipops/releases/tag/v0.95
Thank you! This will be very helpful in visualizing my data.
On Jan 12, 2015, at 3:28 PM, Jeremy Jay notifications@github.com wrote:
Closed #5.
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I am working with data sets with many samples in each category and sometimes the pileups are too high for this type of visualization. For each location, instead of each sample being represented separately, could one dot for each color be represented, but the size dependent on the number of samples?
On Jan 12, 2015, at 3:28 PM, Jeremy Jay notifications@github.com wrote:
Closed #5.
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I've got a version of this, using log-2 scaling (otherwise the single-digits hits are far outweighed by anything over 50.
It looks great! Is it available for download?
Just cleaned it up and pushed it out: https://github.com/pbnjay/lollipops/releases/tag/v0.96
I think there is a bug that switches the colors when they are at the sample location.
I am working with mutation data from multiple cancer types and I would like to plot the mutations of multiple types on one protein and have the color indicate the the different cancer type. Can you alter lollipops so this is possible? Thank you!