Closed oalavijeh closed 3 years ago
I believe the command you want (to search using Uniprot ID instead of Symbol) would be:
./lollipops -U Q96RY7 Q383X
Although even this may not help much, I don't see any annotated domains in pfam where the graphic data comes from. If you wanted to show everything you can try this:
./lollipops -show-disordered -show-motifs -labels -U Q96RY7 Q383X
Many thanks for taking the time to answer!
Firstly, many thanks for taking the time to develop this really useful tool!
I am trying to run the following:
./lollipops IFT140 [some variants]
And getting:
However, on the UNIPORT website: https://www.uniprot.org/uniprot/Q96RY7#sequences the gene seems to exist.
I have tried importing my own json version of this gene and running locally: https://pfam.xfam.org/protein/Q96RY7/graphic
With this code:
./lollipops -l="./ift140.json" -o="json.svg" [some variants]
As per a previous issue but I keep getting this:
Q383X is the first variant I am hoping to plot....
Your advice would be much appreciated thanks
All the best