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joiningdata / lollipops

Lollipop-style mutation diagrams for annotating genetic variations.
GNU General Public License v3.0
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biomart error #7

Closed kanikaarora316 closed 9 years ago

kanikaarora316 commented 9 years ago

Hello,

I downloaded lollipops last month and used it a couple of times, and it worked very well. But unfortunately it's not working anymore. The problem is that it cannot retrieve from Biomart. I get the following error message: biomart error: 400 Bad Request I am not sure if I am the only one facing this issue. Can you please let me know how to get around it? Thanks!

Kanika

pbnjay commented 9 years ago

Looks like biomart is down at the moment. So you're not the only one. You can either try again later or provide the uniprot ID directly with -U

sidnb commented 9 years ago

Hi, I am getting the same error... I don't think it has to do with Biomart being down. Any other ideas?

[sidnb10@xhost11 lollipops-v0.96-linux64]$ ./lollipops TP53 R273C R175H T125 R248Q can't find arial.ttf - for more accurate font sizing use -f=/path/to/arial.ttf HGNC Symbol: TP53 biomart error: 400 Bad Request

pbnjay commented 9 years ago

They made a breaking change to their API. It was fixed in c36d1dc, are you using the latest code or just the binary release?