invalid character '<' looking for beginning of value

joiningdata / lollipops

Lollipop-style mutation diagrams for annotating genetic variations.

GNU General Public License v3.0

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invalid character '<' looking for beginning of value #77

Closed vram27 closed 3 months ago

vram27 commented 11 months ago

Hello

I am trying to generate a lollipop plots using the following code lollipops.exe -legend -show-motifs -show-disordered -labels -pfam -w=700 DDX55 S544 S594

but it throws me this error: invalid character '<' looking for beginning of value

If I remove the -pfam part it gives me the output but without the protein domains labelled. Can you please help me with this. Attaching the screenshots of the output, the latest (without -pfam, -pfam throws error) and before (with -pfam) . DDX55_13112023 DDX55_before

matthiasblum commented 10 months ago

Hi @vram27,

Are you using an older version of lollipops by any chance? The -pfam option has been removed in October since the Pfam website is no longer available. Pfam domains are now retrieved from InterPro.

The latest release is available at https://github.com/joiningdata/lollipops/releases/latest.