Open feanaros opened 1 year ago
You need to check the matrix mat_kod8
since it is not generated by EnrichmentHeatmap. EnrichedHeatmap()
is basically a wrapper on Heatmap()
but with a customized column ordering. It does not modify the original data.
Ok, thank you. So I need to check why this is happening. With other regions, however, it works fine.
Hello @jokergoo I checked my Matrix. Mat_kod8 was converted into a Matrix readable in enrichedHeatmap using your function as.normalizedMatrix(). It does a kind of normalization, but I suppose that It doesnt normalize for Number of cells. Can you explain me which normalization It used for the conversione?
HI, I was trying to plot my enriched heatmap using a normalized matrix. Unfortunately, when I try to plot it, I can see only half of the heatmap plotted. Could you help me to see where the error comes from?
If I remove rows with a tot of zero from matrix, I GET THIS
But if I do manually the coverage of some genes that have the total nr=0, get this
To generate the matrix, I used Seurat Regionmatrix()