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jokergoo / EnrichedHeatmap

make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
http://jokergoo.github.io/EnrichedHeatmap/
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how can I manually cluster with EnrichedHeatMap? #45

Closed Yuxinagli closed 4 years ago

Yuxinagli commented 4 years ago

Hi Dr Gu, I am trying to comparing ChIPseq Enrichment of different subset of Genes which chosen based on RNAseq data. Is there anyway I can manually cluster these genes in different clusters rather than using K-means method. The example presented on Bioconductor.org 'EnrichedHeatmap(mat1, col = col_fun, name = "H3K4me3", row_split = sample(c("A", "B"), length(genes), replace = TRUE), column_title = "Enrichment of H3K4me3") ' is based on random sampling which is not suitable for my need. Thanks

jokergoo commented 4 years ago

If you have a vector which contains the categories of genes (e.g. gene_category), you can assign it to the row_split argument:

EnrichedHeatmap(..., row_split = gene_category)