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jokergoo / EnrichedHeatmap

make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
http://jokergoo.github.io/EnrichedHeatmap/
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strand information #66

Closed MorillonLab closed 2 years ago

MorillonLab commented 2 years ago

Hi ,

Thank you for the package ! I have checked many examples of heatmaps, and I have only seen those related to histone marks (no strand infos for the signal) ; is the strand information at the signal side taken into account, or is it only on the region side ? I would like to plot coverage from RNAseq, and it seems that no matter the strand of the signal, the output is the same. Is there a way to enforce the strand information at both sides ?

thank you in advance !

Marc G.

jokergoo commented 2 years ago

The strand information is considered if the Granges object has it. E.g., upstream of TSS is the 'real' upstream.