Closed noelletnw closed 9 months ago
Hello,
I am trying to directly compare two heatmaps to one another using EnrichedHeatmap, but am unable to figure out how to do so. My code is below.
mat1_trim = normalizeToMatrix(signal=fos_bed_ranges, target=peaks_ranges, value_column = "coverage", extend = c(1000, 1000), mean_mode = "coverage", w = 50, keep = c(0, 0.95)) mat4_trim = normalizeToMatrix(signal=input_bed_ranges, target=peaks_ranges, value_column = "coverage", extend = c(1000, 1000), mean_mode = "coverage", w = 50, keep = c(0, 0.95)) common_min = min(c(mat1_trim, mat4_trim)) common_max = max(c(mat1_trim, mat4_trim)) col_fun = circlize::colorRamp2(c(common_min, common_max), c("white", "red")) EnrichedHeatmap(mat4_trim, col = c(col_fun), name = "Input", row_order = peaks$row_order, row_title="Ranked by Occupancy") + EnrichedHeatmap(mat1_trim, col = c(col_fun), name = "Fos", row_order=peaks$row_order, row_title="Ranked by Occupancy")
When I run this, I get the error
Error: You should have at least two distinct break values.
The code works fine without the col_fun I used to set the ranges to be equal. I believe that I understand why it is throwing the error, but am unsure how to work around it.
I appreciate your help!
Just following up to see if anyone has any insight on this! Thanks!
Hello,
I am trying to directly compare two heatmaps to one another using EnrichedHeatmap, but am unable to figure out how to do so. My code is below.
When I run this, I get the error
Error: You should have at least two distinct break values.
The code works fine without the col_fun I used to set the ranges to be equal. I believe that I understand why it is throwing the error, but am unsure how to work around it.
I appreciate your help!