jokergoo EnrichedHeatmap issues

jokergoo / EnrichedHeatmap

make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.

http://jokergoo.github.io/EnrichedHeatmap/

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issues

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customer reference genes annotation

#37 skytguuu closed 5 years ago
4
multiplemEnrichedheatmaps with only line plots

#36 Papareddy closed 5 years ago
1
Colors of the top_annotation switch randomly

#35 jdekanter closed 5 years ago
3
Position line color not uniform for top annotation and main heatmap body

#34 lakhanp1 closed 5 years ago
3
Error while using show_error argument of anno_enriched()

#33 lakhanp1 closed 5 years ago
2
top_annotation Error in unit(values, units, data = data) : 'x' and 'units' must have length > 0

#32 crazyhottommy closed 5 years ago
5
Suggestion: gpar() for heatmap border

#31 lakhanp1 closed 6 years ago
2
flip a subset of the matrix before clustering rows

#30 crazyhottommy closed 6 years ago
5
extend and w not working for categorical data

#29 crazyhottommy closed 6 years ago
4
heatmap_legend_param does not work for discrete heatmaps

#28 jokergoo closed 6 years ago
0
factor ordering for discrete values

#27 crazyhottommy closed 6 years ago
2
Convert from continuous matrix to discrete matrix

#26 jokergoo closed 6 years ago
1
clustering for chromatins state

#25 crazyhottommy closed 6 years ago
4
support target with category values

#24 jokergoo closed 6 years ago
0
Give an example for calculating correlation of binding and expression.

#23 sameet closed 6 years ago
1
missing a line in the line graph on top of the heatmap

#22 lifengJGI closed 6 years ago
4
adjust default parameter for EnrichedHeatmap() and enriched_score()

#21 jokergoo closed 6 years ago
0
row order when plotting multiple heatmap

#20 olechnwin closed 6 years ago
12
add ticks on x-axis

#19 jokergoo closed 7 years ago
0
1 base pair shift when normalize to target regions

#18 jokergoo closed 6 years ago
3
Adding rowname to enrichedHeatmap

#17 LucoLab closed 7 years ago
6
Update normalize.R

#16 sameet opened 7 years ago
0
`getSignalsFromList` fails.

#15 sameet closed 6 years ago
5
Typo

#14 PeteHaitch closed 7 years ago
1
put `show_row_names` to the main argument

#13 jokergoo closed 7 years ago
0
normalizeToMatrix, w for target

#12 jokergoo closed 7 years ago
0
Target regions without extension

#11 sudhirthakurela closed 6 years ago
1
Detail normalization method used by normalizeToMatrix ?

#10 AlicePsyche closed 6 years ago
4
Use my own matrix instead of `normalizeToMatrix`

#9 AlicePsyche closed 8 years ago
11
Consider the specific condition that no target is overlapped to any signals

#8 jokergoo closed 8 years ago
0
question on color scale on multiple heatmaps

#7 crazyhottommy closed 8 years ago
10
normalizeToMatrix: do not want to extend, and target_ratio = 1

#6 crazyhottommy closed 8 years ago
2
impute DNA methylation when there is no CpG

#5 crazyhottommy closed 6 years ago
2
feature request: enrichment heatmap on genebody

#4 crazyhottommy closed 8 years ago
2
Error with normalizeToMatrix() when using "smooth = TRUE"

#3 ycl6 closed 8 years ago
6
SUGGESTION: More efficient code using matrixStats (>= 0.50.0)

#2 HenrikBengtsson closed 8 years ago
1
show an example to get H3K4me3 GRanges object

#1 crazyhottommy closed 6 years ago
7