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jokergoo / rGREAT

GREAT Analysis - Functional Enrichment on Genomic Regions
https://jokergoo.github.io/rGREAT
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Error in submitGreatJob(gr = gr, bg = bg, species = species) #51

Open emanuelavilla opened 8 months ago

emanuelavilla commented 8 months ago

Hello!

I am running this code to analyse single cell ATAC data up_distalPeaks_enrich <- Great.enrich(gr = up.distal.bed, bg = CMP.bg, title = paste0(x, "_up_distalPeaks"), Type = "GO Biological Process", species = 'mm10')

but it returned this error Screenshot 2024-01-11 at 11 16 18

However, when I inspect the line, the format is correct Screenshot 2024-01-11 at 11 17 15 Furthermore, I have already used the same code for another dataset and it worked.

Any suggestion?

FFeiKong commented 6 months ago

Hi, dear @emanuelavilla,

Sorry to bother, Have you solve this problem successfully? I encoutered the same error like this.

Best, Kong

FFeiKong commented 6 months ago

I knew where the problem is, I typedoptions(scipen = 999)in R to prohibit The use of scientific numeration.

jokergoo commented 6 months ago

Sorry for the bug. Now I have fixed it and enforced all numbers to be integers.