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jokergoo / simplifyEnrichment

Simplify functional enrichment results
https://jokergoo.github.io/simplifyEnrichment
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Can this package be applied to scRNA-seq or scATAC-seq? #36

Closed eleozzr closed 3 years ago

eleozzr commented 3 years ago

This is an awesome package!!! Based on your example, you give a similarity matrix among different GO terms. But I am considering that can this package be applied to scRNA-seq data. For example, If I want to plot a figure that the left panel shows a similarity matrix between cells and the right panel shows some corresponding GO terms or word could of GO terms?

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jokergoo commented 3 years ago

Sorry I didn't see your question! This is a new project and the new issues are easily be ignored by the massive issues from my other projects.

Yes, this is a good suggestion! In this case, we don't need to cluster the GO terms, but direclty use the GO list for each cell cluster, which is basically a use of GO word cloud annotation.

I will think about it. Thank you!

jokergoo commented 3 years ago

Now I have updated the package and added a new vignette of how to add a general word cloud annotation to heatmaps: https://jokergoo.github.io/simplifyEnrichment/articles/word_cloud_anno.html