jolars
commented
5 years ago There is no guarantee that the resulting diagram is going to be exact (i.e. perfectly represent the input). Please make it a habit to always check the fit before plotting.
e <- euler(venn, shape="ellipse")
e
original fitted residuals regionError
A 27 27 0 0.014
B 7 7 0 0.004
C 17 17 0 0.009
D 12 12 0 0.006
E 12 12 0 0.006
F 11 11 0 0.006
A&B 5 5 0 0.003
A&C 0 0 0 0.000
A&D 12 12 0 0.006
A&E 0 0 0 0.000
A&F 1 1 0 0.001
B&C 1 0 1 0.008
B&D 0 0 0 0.000
B&E 4 4 0 0.002
B&F 0 0 0 0.000
C&D 1 0 1 0.008
C&E 0 0 0 0.000
C&F 4 4 0 0.002
D&E 1 0 1 0.008
D&F 1 1 0 0.001
E&F 0 0 0 0.000
A&B&C 0 0 0 0.000
A&B&D 0 0 0 0.000
A&B&E 0 0 0 0.000
A&B&F 0 0 0 0.000
A&C&D 1 0 1 0.008
A&C&E 0 0 0 0.000
A&C&F 0 0 0 0.000
A&D&E 0 0 0 0.000
A&D&F 1 1 0 0.001
A&E&F 0 0 0 0.000
B&C&D 0 0 0 0.000
B&C&E 0 0 0 0.000
B&C&F 0 0 0 0.000
B&D&E 0 0 0 0.000
B&D&F 0 0 0 0.000
B&E&F 0 0 0 0.000
C&D&E 0 0 0 0.000
C&D&F 0 0 0 0.000
C&E&F 1 0 1 0.008
D&E&F 0 0 0 0.000
A&B&C&D 0 0 0 0.000
A&B&C&E 0 0 0 0.000
A&B&C&F 0 0 0 0.000
A&B&D&E 1 0 1 0.008
A&B&D&F 0 0 0 0.000
A&B&E&F 0 0 0 0.000
A&C&D&E 0 0 0 0.000
A&C&D&F 0 0 0 0.000
A&C&E&F 0 0 0 0.000
A&D&E&F 0 0 0 0.000
B&C&D&E 0 0 0 0.000
B&C&D&F 0 0 0 0.000
B&C&E&F 0 0 0 0.000
B&D&E&F 0 0 0 0.000
C&D&E&F 0 0 0 0.000
A&B&C&D&E 0 0 0 0.000
A&B&C&D&F 0 0 0 0.000
A&B&C&E&F 0 0 0 0.000
A&B&D&E&F 0 0 0 0.000
A&C&D&E&F 0 0 0 0.000
B&C&D&E&F 0 0 0 0.000
A&B&C&D&E&F 1 0 1 0.008Observe that some intersections are missing, hence the missing quantities in the plot.
yesitsjess
cts <- c(27, 7, 17, 12, 12, 11, 5, 0, 12, 0, 1, 1, 0, 4, 0, 1, 0, 4, 1, 1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1)nms <- c("A", "B", "C", "D", "E", "F", "A&B", "A&C", "A&D", "A&E", "A&F", "B&C", "B&D", "B&E", "B&F", "C&D", "C&E", "C&F", "D&E", "D&F", "E&F", "A&B&C", "A&B&D", "A&B&E", "A&B&F", "A&C&D", "A&C&E", "A&C&F", "A&D&E", "A&D&F", "A&E&F", "B&C&D", "B&C&E", "B&C&F", "B&D&E", "B&D&F", "B&E&F", "C&D&E", "C&D&F", "C&E&F", "D&E&F", "A&B&C&D", "A&B&C&E", "A&B&C&F", "A&B&D&E", "A&B&D&F", "A&B&E&F", "A&C&D&E", "A&C&D&F", "A&C&E&F", "A&D&E&F", "B&C&D&E", "B&C&D&F", "B&C&E&F", "B&D&E&F", "C&D&E&F", "A&B&C&D&E", "A&B&C&D&F", "A&B&C&E&F", "A&B&D&E&F", "A&C&D&E&F", "B&C&D&E&F", "A&B&C&D&E&F")venn <- structure(combs_cnt, names=combs_txt)plot(euler(venn, shape="ellipse"), quantities=T)For example, there should be a total of 49 in the circle for A, but this plot shows only 46. A alone, A&B, A&D, A&F and A&D&F are correct, but A&C&D, A&B&D&E and A&B&C&D&E&F are missing.
Any advice?