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jolespin / veba

A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
GNU Affero General Public License v3.0
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[Question] VEBA-biosynthetic_env/bin/mmseqs: No such file or directory #84

Closed javiercnav closed 8 months ago

javiercnav commented 8 months ago

Hello there, first, yes, I have read the FAQ section :) I am running the VEBA-biosynthetic pipeline, and the protocol fails at the 4__mmseq2_protein step. When I check the log for this step, I get the following error:

/bin/bash: /projects/navarro_lab/envs/VEBA-biosynthetic_env/bin/mmseqs: No such file or directory

Also, I want to add that I reinstall VEBA to the latest release and when I do: conda env list, I do not see VEBA-biosynthetic_env listed among my environments. Perhaps this is related to the mmseq issue?

Could you advice? Bests!

javiercnav commented 8 months ago

Hello there, I have reinstalled VEBA to the current version and it all works well. thank you!

jolespin commented 8 months ago

Excellent! Which version are you running?

Apologies for the delay, I haven't been getting e-mail notifications for some reason.

I'm going to close this issue. Let me know if you have any more issues.

javiercnav commented 8 months ago

Hello, I am using version 2.0.0 and the VDB_v6. Thank you for all your hard work!