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jolespin
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veba
A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
GNU Affero General Public License v3.0
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Update README.md
#75
jolespin
closed
8 months ago
0
README
#74
jolespin
closed
8 months ago
0
Merge pull request #72 from jolespin/devel
#73
jolespin
closed
8 months ago
0
v2.0.0
#72
jolespin
closed
8 months ago
0
consolidate
#71
jolespin
closed
9 months ago
0
Update interpreting_module_outputs.md
#70
jolespin
closed
9 months ago
0
added profiling docs and quick guides
#69
jolespin
closed
9 months ago
0
merged counts and taxonomy walkthrough
#68
jolespin
closed
9 months ago
0
Update README.md
#67
jolespin
closed
9 months ago
0
Update README.md
#66
jolespin
closed
9 months ago
0
Updated annotate description
#65
jolespin
closed
9 months ago
0
Updated walkthroughs
#64
jolespin
closed
9 months ago
0
Merge pull request #62 from jolespin/main
#63
jolespin
closed
9 months ago
0
merged
#62
jolespin
closed
9 months ago
0
Update CITATIONS.md
#61
jolespin
closed
9 months ago
0
Formatting
#60
jolespin
closed
9 months ago
0
Update README.md
#59
jolespin
closed
10 months ago
0
Update README.md
#58
jolespin
closed
10 months ago
0
README
#57
jolespin
closed
10 months ago
0
Merge pull request #55 from jolespin/devel
#56
jolespin
closed
10 months ago
0
Merge pull request #54 from jolespin/main
#55
jolespin
closed
10 months ago
0
Merge pull request #53 from jolespin/devel
#54
jolespin
closed
10 months ago
0
Update Dockerfile
#53
jolespin
closed
10 months ago
0
Merge pull request #51 from jolespin/devel
#52
jolespin
closed
10 months ago
0
README
#51
jolespin
closed
10 months ago
0
Merging
#50
jolespin
closed
10 months ago
0
v1.5.0
#49
jolespin
closed
10 months ago
0
[Bug] classify-prokaryotic.py excludes archaeal genomes (Downstream Issue in building custom HUMAnN db)
#48
nicolazarte
closed
10 months ago
5
[Bug] featureCounts error in binning-eukaryotic.py | ERROR: failed to find the gene identifier attribute in the 9th column of the provided GTF file.
#47
javiercnav
closed
10 months ago
6
Issue: Broken pipe error in kofamscan step
#46
nicolazarte
closed
10 months ago
3
[Bug] DAS_Tool starts but fails after calculating contig lengths (binning-prokaryotic.py)
#45
abissett
closed
9 months ago
14
blacklist eukaryotes
#44
jolespin
closed
11 months ago
0
Fixed error with unnecessary argument in compile_eukaryotic_classifications.py script
#43
jolespin
closed
11 months ago
0
v1.4.2 for classify-eukaryotic
#42
jolespin
closed
11 months ago
0
v1.4.2
#41
jolespin
closed
11 months ago
0
Update DATABASE.md
#40
jolespin
closed
11 months ago
0
v1.4.1
#39
jolespin
closed
11 months ago
0
Update devel w/ v1.4.0
#38
jolespin
closed
11 months ago
0
Update README.md
#37
jolespin
closed
11 months ago
0
v1.4.0
#36
jolespin
closed
11 months ago
0
[Question] Is it possible to use the VEBA Microeukaryotic database with MMSEQS2 taxonomy?
#35
franlat
opened
1 year ago
19
Question - Length mismatch during merging step of annotation
#34
MACampbell91
closed
1 year ago
0
Update adapting_commands_for_aws.md
#33
jolespin
closed
1 year ago
0
Update adapting_commands_for_docker.md
#32
jolespin
closed
1 year ago
0
v1.3.0
#31
jolespin
closed
1 year ago
1
[Question] Why isn't `binning-eukaryotic.py` finding any eukaryotic bins and why are the output files empty?
#30
franlat
closed
1 year ago
9
[Question] What does the homogenity value mean in the output taxonomy.tsv file of classify-eukaryotic
#29
franlat
closed
1 year ago
7
[Question] CHECKVDB environment variable NOT set
#28
javiercnav
closed
1 year ago
9
[Bug] different number of reads in paired input files; repair.sh does not seem to be working in preprocess.py
#27
yangchen2
closed
1 year ago
5
[Question] Why do I get permission error for binning-prokaryotic.py only and not for binning-viral modules?
#26
the-eon-flux
closed
1 year ago
1
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