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jon-xu / scSplit

Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples within a mixed population.
MIT License
39 stars 9 forks source link

Python packages #1

Closed davetang closed 5 years ago

davetang commented 5 years ago

I'm trying to install the list of packages listed in your README using conda. However, there are several packages that cannot be found.

ResolvePackageNotFound: 
  - pickle
  - vcf
  - random
  - math
  - sklearn

I guess the pickle, math, and random packages are part of the standard library. As for the other packages, did you mean scikit-learn for sklearn and vcftools for vcf?

davetang commented 5 years ago

In addition, I can't install the statistics package using Python version 3.6.

UnsatisfiableError: The following specifications were found to be in conflict:
  - python=3.6
  - statistics -> python[version='>=2.7,<2.8.0a0']
jon-xu commented 5 years ago

Hi Dave,

Sorry for the late reply!

Yes, please install scikit-learn and PyVCF. And statistics module is part of python3 standard library, you don't need to install it.

Thanks for pointing it out and I'll make it clear in the README.

jon-xu commented 5 years ago

@davetang have you been successful on this? Please feel free let me know if any other issues.