Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples within a mixed population.
I hope this finds you well. Not an issue per se, but I was wondering whether you had explored or considered the use of scSplit for demultiplexing pooled samples in scATAC-seq (or snATAC-seq), specifically 10X data?
Hi,
Thanks for the question - it's an interesting idea!
Unfortunately we didn't test this tool on sc/snATAC-seq yet, although theoretically it should be possible.
Cheers
Hi,
I hope this finds you well. Not an issue per se, but I was wondering whether you had explored or considered the use of scSplit for demultiplexing pooled samples in scATAC-seq (or snATAC-seq), specifically 10X data?
Thanks!