AttributeError: 'DataFrame' object has no attribute 'ix'

[bloodmutilomics]

looks like current scSplit using an older version of indexing using .ix instead of .loc. I got error message warnings.warn( Traceback (most recent call last): File "/sfs/qumulo/qhome/yh9fj/.local/lib/python3.8/site-packages/scSplit/scSplit", line 642, in scSplit() File "/sfs/qumulo/qhome/yh9fj/.local/lib/python3.8/site-packages/scSplit/scSplit", line 354, in init getattr(self, args.command)() File "/sfs/qumulo/qhome/yh9fj/.local/lib/python3.8/site-packages/scSplit/scSplit", line 525, in run model.distinguishing_alleles(pos) File "/sfs/qumulo/qhome/yh9fj/.local/lib/python3.8/site-packages/scSplit/scSplit", line 280, in distinguishing_alleles alt_or_ref = alt_or_ref.ix[[x for x in alt_or_ref.index if x[0] not in ['X','Y','MT']]] File "/apps/software/standard/core/anaconda/2020.11-py3.8/lib/python3.8/site-packages/pandas/core/generic.py", line 5139, in getattr return object.getattribute(self, name) AttributeError: 'DataFrame' object has no attribute 'ix'

This is my code -- python $dir_scSplit/scSplit run --r $dir_vcf/ref_filtered.csv -a $dir_vcf/alt_filtered.csv -n 2

I have updated pandas to 1.3.3 Thanks -Yong yh9fj@virginia.edu

[jon-xu]

Yong,

Thanks for pointing it out! Some inconsistency in version on Pypi.

Please clone it from github before I fix it in Pypi.

Thanks, Jon

[jon-xu]

ok, pypi is up to date as well. Thanks again!