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jon-xu / scSplit

Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples within a mixed population.
MIT License
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Error during running the scSplit #21

Closed ahmadsam66 closed 2 years ago

ahmadsam66 commented 2 years ago

Hello,

I wanted to run the scSplit and I faced with following error :

Traceback (most recent call last):
  File "./scSplit", line 19, in <module>
    import os, sys, io, vcf, csv, math, datetime, pickle, argparse, gzip
  File "/home/c97000131/miniconda3/lib/python3.7/site-packages/vcf/__init__.py", line 166, in <module>
    from parser import Reader, Writer
ImportError: cannot import name 'Reader' from 'parser' (/home/c97000131/miniconda3/lib/python3.7/lib-dynload/parser.cpython-37m-x86_64-linux-gnu.so)
ahmadsam66 commented 2 years ago

Solved I used conda version of PyVCF