output to different directory

[drneavin]

Hi Jon,

I am wondering if there is a method to indicate a directory where you want the output of scSplit run and scSplit genotype? It would be great if I don't have to cd to the directory where I want them to be before running it.

Thanks!

-Drew

[jon-xu]

Hi Drew,

Yes I have added it in the newest release v1.0.5. Please re-download and try.

Thanks for pointing it out!

Jon

[drneavin]

Fantastic! Thanks Jon!

[drneavin]

Thanks for putting in this functionality Jon! I just tested it out with the new release and it looks like it works nicely for scSplit run and scSplit genotype but you still need to put the full path for the scSplit count options -r and -a. Would you be able to make it so that it automatically puts the alt and ref matrices in the designtated out directory?

[jon-xu]

Ok, I thought you could add path in -r/-a parameters, but you’re right, better to make it consistent.

Will revise and let you know.

Cheers,

Jon

On 1 Apr 2020, at 14:47, drneavin notifications@github.com wrote:



Thanks for putting in this functionality Jon! I just tested it out with the new release and it looks like it works nicely for scSplit run and scSplit genotype but you still need to put the full path for the scSplit count options -r and -a. Would you be able to make it so that it automatically puts the alt and ref matrices in the designtated out directory?

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[jon-xu]

It's now built in v1.0.6.

Thanks again!

[jon-xu]

Please use the newest v1.0.7 instead (bug fixes).