Uses the existing work_dir variable to make the slurm_logs directory locations and initial cd to set the slurm job working directory explicit as inside the folder generated by prep_subs.py. Previous behavior made the slurm job working directory the working directory of the user when a slurm job is submitted.
This change should allow users to submit the slurm script generated by one_wag's prep_subs.py via sbatch even when their working directory isn't in the specific generated folder for that sample.
Uses the existing work_dir variable to make the slurm_logs directory locations and initial cd to set the slurm job working directory explicit as inside the folder generated by prep_subs.py. Previous behavior made the slurm job working directory the working directory of the user when a slurm job is submitted.
This change should allow users to submit the slurm script generated by one_wag's prep_subs.py via sbatch even when their working directory isn't in the specific generated folder for that sample.
(tested on four random breed canfam3 jobs)