jonassibbesen / rpvg

Method for inferring path posterior probabilities and abundances from pangenome graph read alignments
MIT License
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Add skew-normal option for fragment length distribution #23

Closed jeizenga closed 3 years ago

jeizenga commented 3 years ago

Includes a fitting algorithm, numerical methods, and unit testing for skew-normal fragment length distributions (including truncated skew-normal for effective fragment length). The skew-normal code is not yet hooked up to the main function, but it can be triggered by changing the skew_normal flag to true in the FragmentLengthDist constructor.