Add joint haplotype-specific expression output - Githubissues

jonassibbesen / rpvg

Method for inferring path posterior probabilities and abundances from pangenome graph read alignments

MIT License

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Add joint haplotype-specific expression output #26

Closed jonassibbesen closed 2 years ago

jonassibbesen commented 2 years ago

Improvements:

Added haplotype-specific expression estimates to the haplotyping output and renamed the file to \<output-prefix>_joint.txt. Only haplotype combinations with a probability at or above the precision threshold are written (see option --prob-precision)).

Changes to existing options and outputs:

Removed haplotyping output (\<output-prefix>_haps.txt). See above.
Added underscore (_) between Name and number in the haplotyping output header to make it consistent with the new output.