Added non-quality score and max fragment length options

jonassibbesen / rpvg

Method for inferring path posterior probabilities and abundances from pangenome graph read alignments

MIT License

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Closed jonassibbesen closed 2 years ago

jonassibbesen commented 2 years ago

Improvements:

Added option to specify that the alignment score is not quality adjusted (--score-not-qual).
Added option to specify the maximum fragment length as the number of standard deviations from the mean (--max-num-sd-frag).