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jonathancrabtree / Circleator

Flexible circular visualization of genome-associated data with BioPerl and SVG.
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Add walkthroughs/tutorials for basic use-cases. #11

Open jonathancrabtree opened 10 years ago

jonathancrabtree commented 10 years ago

Add walkthroughs/tutorials for basic use-cases to the documentation. The resulting images can also be added to the gallery.

jonathancrabtree commented 10 years ago

From the manuscript:

  1. visualizing the gene annotation and DNA sequence data from a GenBank flat file e.g., for a finished or draft bacterial genome
  2. investigating patterns of gene conservation in two or more closely-related strains or serovars
  3. showing SNPS and indels in several microbial strains relative to a reference genome and reference gene set
  4. viewing coverage plots of RNA-Seq data from multiple transcriptomic samples aligned to one or more prokaryotic or eukaryotic genomes
jonathancrabtree commented 9 years ago

A comprehensive GenBank flat file visualization tutorial has been added:

http://jonathancrabtree.github.io/Circleator/tutorials/gb_annotation.html

jonathancrabtree commented 8 years ago

Four done, only one (graphs and heat maps) left.