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jonathancrabtree / Circleator

Flexible circular visualization of genome-associated data with BioPerl and SVG.
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Filter BioPerl Unrecognized DBSOURCE data warning. #19

Open jonathancrabtree opened 10 years ago

jonathancrabtree commented 10 years ago

Filter or address the following BioPerl warning. It occurs when BioPerl parses L42023.1.gb, the H. influenzae flat file used in the gb_annotation tutorial:

--------------------- WARNING ---------------------
MSG: Unrecognized DBSOURCE data: BioProject: PRJNA219

---------------------------------------------------

Here it is in context:

$ circleator --data=L42023.1.gb --config=genes-and-percentGC-1.txt --pad=100 > hinf-genes-%gc-1.svg
INFO - started drawing figure using genes-and-percentGC-1.txt
INFO - reading from annot_file=./L42023.1.gb, seq_file=, with seqlen=

--------------------- WARNING ---------------------
MSG: Unrecognized DBSOURCE data: BioProject: PRJNA219

---------------------------------------------------
INFO - L42023: 3521 feature(s) and 1830138 bp of sequence
INFO - read 1 contig(s) from 1 input annotation and/or sequence file(s) 
INFO - finished drawing figure using genes-and-percentGC-1.txt