Thank you very much for a great tool. Here are a few questions.
I tried looking into all examples and configuration files of Circleator. But couldn't find anything related to GFF3 format even though a file exists for this format in the conf folder. I want to use the gencode's gtf file in the same format as the example gff3 provided by Circleator. Can this be done?
Instead of making a flatfile using bam_get_coverage, can I use a bedgraph, which is similar to flatfile format, generated by bedops?
All I want to show is the GTF file and the bedgraph/flatfile tracks only. No rRNAs, tRNAs are required. I want a very simple circular graph something that looks like this - http://jonathancrabtree.github.io/Circleator/images/CM000961-genes-percentGC-GCskew-1-400.png
Can you please provide a startup config file to do this? I can play with it in terms of enhancing it down the road.
I have tried 4-5 examples from the documentation page and I have started a liking towards this tool.
Hi Jonathan-
Thank you very much for a great tool. Here are a few questions.
I tried looking into all examples and configuration files of Circleator. But couldn't find anything related to GFF3 format even though a file exists for this format in the conf folder. I want to use the gencode's gtf file in the same format as the example gff3 provided by Circleator. Can this be done?
Instead of making a flatfile using bam_get_coverage, can I use a bedgraph, which is similar to flatfile format, generated by bedops?
All I want to show is the GTF file and the bedgraph/flatfile tracks only. No rRNAs, tRNAs are required. I want a very simple circular graph something that looks like this - http://jonathancrabtree.github.io/Circleator/images/CM000961-genes-percentGC-GCskew-1-400.png Can you please provide a startup config file to do this? I can play with it in terms of enhancing it down the road.
I have tried 4-5 examples from the documentation page and I have started a liking towards this tool.
Thanks