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jonathanking
/
sidechainnet
An all-atom protein structure dataset for machine learning.
BSD 3-Clause "New" or "Revised" License
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Doc and setup updates
#68
jonathanking
closed
3 months ago
0
Issue installing
#67
Max-Witwer
opened
4 months ago
2
Documentation typo
#66
bondrewd
closed
3 months ago
1
error value in batch
#65
omarkhaled-28
opened
5 months ago
1
Missing sets / resolution
#64
thamelry
closed
3 months ago
2
Issue with not importing sidechainnet
#63
Shishir8957
closed
4 months ago
7
SidechainNet v1.0
#62
jonathanking
closed
8 months ago
0
SidechainNet potential 1.0 update
#61
jonathanking
closed
8 months ago
1
Confusion Regarding train_eval and validation sets
#60
harshagrawal13
closed
10 months ago
2
check all XYZ coords in PDBbuilder
#59
mrjoness
closed
1 year ago
3
Problematic structures?
#58
KirillShmilovich
closed
8 months ago
2
Sidechainnet for CASP 13 to CASP 15
#57
harshagrawal13
opened
1 year ago
6
Can't pickle local object 'get_collate_fn.<locals>.collate_fn'
#56
Aditya-Tandon
closed
1 year ago
6
Huggingface datasets integration?
#55
ChenchaoZhao
opened
1 year ago
5
5.1.1 Creating a list of ProteinNet IDs - error
#54
alpha-omega-labs
opened
1 year ago
5
Creation of custom sidechainnet enties for .cif files
#53
alpha-omega-labs
opened
1 year ago
4
Update research_openmm branch with fastbuild.
#52
jonathanking
closed
1 year ago
0
Fix for #48.
#51
jonathanking
closed
1 year ago
0
Order of crds
#50
ychnh
closed
1 year ago
3
Interpretation of sidechainnet IDs in train split
#49
sidnarayanan
closed
1 year ago
1
error when generating pdb
#48
xxiexuezhi
closed
1 year ago
2
Are you going to release dataset for CASP-14?
#47
jaydeepradeJD
closed
1 year ago
4
arbitrary offsets
#46
dkoes
closed
1 year ago
0
Openmm 26atom
#45
dkoes
closed
2 years ago
1
Generating SidechainNet angles for arbitrary PDB files
#44
AndreeaMusat
opened
2 years ago
6
No build info for Glycine
#43
OlaRonning
closed
2 years ago
1
Support using np.nan as padding characters. Improve data generation and batching.
#42
jonathanking
closed
2 years ago
0
Colab create_custom walkthrough error
#41
Jiram-Kin
closed
2 years ago
4
Custom dataset .load() broken
#40
AllanSCosta
closed
2 years ago
3
Create a fix for Issue #38.
#39
jonathanking
closed
2 years ago
0
wrong structure for 1GJJ_1_A?
#38
wwang2
closed
2 years ago
7
Structure procedence (NMR, Xray)
#37
hypnopump
opened
2 years ago
1
scn.load() error
#36
liuxm117
opened
2 years ago
3
Implement SCNDataset, SCNProtein, and HydrogenBuilder.
#35
jonathanking
closed
2 years ago
0
Add string sequences to Dataloader as "raw_seqs".
#34
jonathanking
closed
3 years ago
0
There are some repeating pids in the datasets
#33
xiongzhp
closed
3 years ago
4
Support custom datasets. Add + update dataset content. Improve functionality.
#32
jonathanking
closed
3 years ago
0
Secondry Strucutre DSSP
#31
OsamaGhandour
closed
3 years ago
4
(dev) Support custom datasets. Add + update dataset content. Improve functionality.
#30
jonathanking
closed
3 years ago
0
Dataset Improvements and Create Custom
#29
jonathanking
closed
3 years ago
0
Create custom
#28
jonathanking
closed
3 years ago
0
Merge Dataset improvements into Create Custom
#27
jonathanking
closed
3 years ago
0
Allow users to specify custom datasets.
#26
jonathanking
closed
3 years ago
0
Add modified residue and original sequence information to dataset. Add functionality.
#25
jonathanking
closed
3 years ago
1
Add commits from openmm2 that improve the dataset without adding openmm functionality
#24
jonathanking
closed
3 years ago
1
Fix references to sb.to_pdbstr().
#23
jonathanking
closed
3 years ago
0
Update openmm branch after master has been modified.
#22
jonathanking
closed
3 years ago
0
There are some wrong PDB IDs!!!
#21
xiongzhp
closed
3 years ago
1
Can I obtain the features by PDB ID?
#20
xiongzhp
closed
3 years ago
0
dRMSD Calculations & Bond Angles.
#19
OsamaGhandour
closed
3 years ago
5
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