Don't get all sorts of chromosomes when peak isn't found

jonathonthill / MMAPPR2

Mutation Mapping Analysis Pipeline for Pooled RNA-Seq

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Don't get all sorts of chromosomes when peak isn't found #88

Open kjohnsen opened 6 years ago

kjohnsen commented 6 years ago

See Nkx2.5/star-GRCz11 for example.

Have to re-consider prePeak?

If no significant peak is detected, the current strategy produces a low threshold (3*standard deviation + median), which in turn gives us a bunch of garbage peaks. It would be nice to avoid this.