curtcorum
commented
1 month ago Install for development seems ok. I forked the repository before installing.
(pulpy) curt@green:~/src/pulpy$ pip install -e .
Obtaining file:///mnt/Champaign_4TB_EX/Champaign%20Dropbox/Curt%20Corum/src_green/pulpy
Installing build dependencies ... done
Getting requirements to build wheel ... done
Installing backend dependencies ... done
Preparing wheel metadata ... done
Installing collected packages: pulpy
Attempting uninstall: pulpy
Found existing installation: pulpy 1.8.1
Uninstalling pulpy-1.8.1:
Successfully uninstalled pulpy-1.8.1
Running setup.py develop for pulpy
Successfully installed pulpyIn installing the development dependencies there seems to be some path issues.
(pulpy) curt@green:~/src/pulpy$ pip install coverage ruff sphinx sphinx_rtd_theme isort
Collecting coverage
Downloading coverage-7.5.3-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (232 kB)
|████████████████████████████████| 232 kB 1.4 MB/s
Collecting ruff
Downloading ruff-0.4.7-py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.8 MB)
|████████████████████████████████| 8.8 MB 17.2 MB/s
Collecting sphinx
Downloading sphinx-7.1.2-py3-none-any.whl (3.2 MB)
|████████████████████████████████| 3.2 MB 64.0 MB/s
Collecting sphinx_rtd_theme
Downloading sphinx_rtd_theme-2.0.0-py2.py3-none-any.whl (2.8 MB)
|████████████████████████████████| 2.8 MB 63.2 MB/s
Collecting isort
Downloading isort-5.13.2-py3-none-any.whl (92 kB)
|████████████████████████████████| 92 kB 282 kB/s
Collecting sphinxcontrib-serializinghtml>=1.1.5
Downloading sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl (94 kB)
|████████████████████████████████| 94 kB 4.1 MB/s
Collecting Pygments>=2.13
Downloading pygments-2.18.0-py3-none-any.whl (1.2 MB)
|████████████████████████████████| 1.2 MB 70.2 MB/s
Collecting docutils<0.21,>=0.18.1
Downloading docutils-0.20.1-py3-none-any.whl (572 kB)
|████████████████████████████████| 572 kB 50.4 MB/s
Collecting packaging>=21.0
Downloading packaging-24.0-py3-none-any.whl (53 kB)
|████████████████████████████████| 53 kB 3.2 MB/s
Collecting importlib-metadata>=4.8; python_version < "3.10"
Downloading importlib_metadata-7.1.0-py3-none-any.whl (24 kB)
Collecting sphinxcontrib-htmlhelp>=2.0.0
Downloading sphinxcontrib_htmlhelp-2.0.1-py3-none-any.whl (99 kB)
|████████████████████████████████| 99 kB 15.2 MB/s
Collecting sphinxcontrib-applehelp
Downloading sphinxcontrib_applehelp-1.0.4-py3-none-any.whl (120 kB)
|████████████████████████████████| 120 kB 88.8 MB/s
Collecting babel>=2.9
Downloading Babel-2.15.0-py3-none-any.whl (9.6 MB)
|████████████████████████████████| 9.6 MB 73.2 MB/s
Collecting sphinxcontrib-jsmath
Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB)
Collecting imagesize>=1.3
Downloading imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB)
Collecting sphinxcontrib-devhelp
Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB)
|████████████████████████████████| 84 kB 5.5 MB/s
Collecting alabaster<0.8,>=0.7
Downloading alabaster-0.7.13-py3-none-any.whl (13 kB)
Collecting sphinxcontrib-qthelp
Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB)
|████████████████████████████████| 90 kB 15.3 MB/s
Collecting Jinja2>=3.0
Downloading jinja2-3.1.4-py3-none-any.whl (133 kB)
|████████████████████████████████| 133 kB 69.3 MB/s
Collecting requests>=2.25.0
Downloading requests-2.32.3-py3-none-any.whl (64 kB)
|████████████████████████████████| 64 kB 5.5 MB/s
Collecting snowballstemmer>=2.0
Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB)
|████████████████████████████████| 93 kB 2.0 MB/s
Collecting sphinxcontrib-jquery<5,>=4
Downloading sphinxcontrib_jquery-4.1-py2.py3-none-any.whl (121 kB)
|████████████████████████████████| 121 kB 67.0 MB/s
Collecting zipp>=0.5
Downloading zipp-3.19.1-py3-none-any.whl (9.0 kB)
Requirement already satisfied: pytz>=2015.7; python_version < "3.9" in /usr/lib/python3/dist-packages (from babel>=2.9->sphinx) (2019.3)
Collecting MarkupSafe>=2.0
Downloading MarkupSafe-2.1.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (26 kB)
Requirement already satisfied: idna<4,>=2.5 in /usr/lib/python3/dist-packages (from requests>=2.25.0->sphinx) (2.8)
Requirement already satisfied: certifi>=2017.4.17 in /usr/lib/python3/dist-packages (from requests>=2.25.0->sphinx) (2019.11.28)
Requirement already satisfied: urllib3<3,>=1.21.1 in /usr/lib/python3/dist-packages (from requests>=2.25.0->sphinx) (1.25.8)
Collecting charset-normalizer<4,>=2
Downloading charset_normalizer-3.3.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (141 kB)
|████████████████████████████████| 141 kB 82.8 MB/s
Installing collected packages: coverage, ruff, sphinxcontrib-serializinghtml, Pygments, docutils, packaging, zipp, importlib-metadata, sphinxcontrib-htmlhelp, sphinxcontrib-applehelp, babel, sphinxcontrib-jsmath, imagesize, sphinxcontrib-devhelp, alabaster, sphinxcontrib-qthelp, MarkupSafe, Jinja2, charset-normalizer, requests, snowballstemmer, sphinx, sphinxcontrib-jquery, sphinx-rtd-theme, isort
WARNING: The scripts coverage, coverage-3.8 and coverage3 are installed in '/home/curt/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The script pygmentize is installed in '/home/curt/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The script docutils is installed in '/home/curt/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The script pybabel is installed in '/home/curt/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The script normalizer is installed in '/home/curt/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts sphinx-apidoc, sphinx-autogen, sphinx-build and sphinx-quickstart are installed in '/home/curt/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts isort and isort-identify-imports are installed in '/home/curt/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Successfully installed Jinja2-3.1.4 MarkupSafe-2.1.5 Pygments-2.18.0 alabaster-0.7.13 babel-2.15.0 charset-normalizer-3.3.2 coverage-7.5.3 docutils-0.20.1 imagesize-1.4.1 importlib-metadata-7.1.0 isort-5.13.2 packaging-24.0 requests-2.32.3 ruff-0.4.7 snowballstemmer-2.2.0 sphinx-7.1.2 sphinx-rtd-theme-2.0.0 sphinxcontrib-applehelp-1.0.4 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.1 sphinxcontrib-jquery-4.1 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 sphinxcontrib-serializinghtml-1.1.5 zipp-3.19.1
https://github.com/openjournals/joss-reviews/issues/6586
Please consider adding conda support. For example, all my current projects use conda for dependencies (e.g. sigpy), since it integrates dependencies more reliably. For replication, pip is sufficient, but for actual usage and incorporating as a dependency, conda would greatly expand utility.
https://medium.com/analytics-vidhya/publish-a-python-package-to-conda-b352eb0bcb2e